RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 TAB2Q9NYJ8 693 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 LUC7L2Q9Y383 392 aaKnown RBP22.18■■□□□ 1.14
SDF4-205ENST00000465727 KCPQ6ZWJ8 1503 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 DOCK2Q92608 1830 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 MYH2Q9UKX2 1941 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 GOLGA6BA6NDN3 693 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 UBXN1Q04323 297 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 ZNF658Q5TYW1 1059 aaPredicted RBP22.18■■□□□ 1.14
SDF4-205ENST00000465727 JAKMIP2Q96AA8 810 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 ZBTB9Q96C00 473 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 FAM184BQ9ULE4 1060 aa22.18■■□□□ 1.14
SDF4-205ENST00000465727 XDHP47989 1333 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 H7C1D1 291 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 AGPSO00116 658 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 ENC1O14682 589 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 GTPBP6O43824 516 aaPredicted RBP22.17■■□□□ 1.14
SDF4-205ENST00000465727 ERLIN2O94905 339 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 CSB-PGBD3P0DP91 1061 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 MCTP2Q6DN12 878 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 LDHAL6AQ6ZMR3 332 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 ZNF654Q8IZM8 581 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 PHF20Q9BVI0 1012 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 PLEKHA4Q9H4M7 779 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 INCENPQ9NQS7 918 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 TRIM10Q9UDY6 481 aa22.17■■□□□ 1.14
SDF4-205ENST00000465727 GNAT2P19087 354 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 IRAK1P51617 712 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 E2F4Q16254 413 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 AMOTL1Q8IY63 956 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 MICALL1Q8N3F8 863 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 ZBTB38Q8NAP3 1195 aaPredicted RBP22.16■■□□□ 1.14
SDF4-205ENST00000465727 NELFBQ8WX92 580 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 MYCBPQ99417 103 aaPredicted RBP22.16■■□□□ 1.14
SDF4-205ENST00000465727 HDAC6Q9UBN7 1215 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 CAPN11Q9UMQ6 739 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 RTL9Q8NET4 1388 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 TTC26A0AVF1 554 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 EXOC5O00471 708 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 HERVK_113P62684 666 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 POTEDQ86YR6 584 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 NACAP1Q9BZK3 213 aa22.16■■□□□ 1.14
SDF4-205ENST00000465727 RNF41Q9H4P4 317 aaPredicted RBP22.16■■□□□ 1.14
SDF4-205ENST00000465727 RNF216Q9NWF9 866 aaPredicted RBP22.16■■□□□ 1.14
SDF4-205ENST00000465727 LGALS16A8MUM7 142 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 GOLGA8KD6RF30 607 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 ANKRD65E5RJM6 399 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 CYLC1P35663 651 aaPredicted RBP22.15■■□□□ 1.14
SDF4-205ENST00000465727 ITIH3Q06033 890 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 MEA1Q16626 185 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 CCDC82Q8N4S0 544 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 VGLL2Q8N8G2 317 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 KAT14Q9H8E8 782 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 SHTN1A0MZ66 631 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 USP8P40818 1118 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 ATP2C1P98194 919 aaPredicted RBP22.15■■□□□ 1.14
SDF4-205ENST00000465727 FNBP4Q8N3X1 1017 aaPredicted RBP22.15■■□□□ 1.14
SDF4-205ENST00000465727 MB21D1Q8N884 522 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 CAGE1Q8TC20 777 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 AENQ8WTP8 325 aaKnown RBP22.15■■□□□ 1.14
SDF4-205ENST00000465727 RIN2Q8WYP3 895 aaPredicted RBP22.15■■□□□ 1.14
SDF4-205ENST00000465727 DRC1Q96MC2 740 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 TACC3Q9Y6A5 838 aa22.15■■□□□ 1.14
SDF4-205ENST00000465727 COL22A1Q8NFW1 1626 aaPredicted RBP22.14■■□□□ 1.14
SDF4-205ENST00000465727 ATXN2Q99700 1313 aaKnown RBP22.14■■□□□ 1.14
SDF4-205ENST00000465727 ARAP2Q8WZ64 1704 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 MBD4O95243 580 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 IPO7O95373 1038 aaKnown RBP22.14■■□□□ 1.13
SDF4-205ENST00000465727 EEF1GP26641 437 aaKnown RBP22.14■■□□□ 1.13
SDF4-205ENST00000465727 MAP3K12Q12852 859 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 PDXDC2PQ6P474 469 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 KIAA1328Q86T90 577 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 CCDC170Q8IYT3 715 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 TTLL11Q8NHH1 800 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 CAPS2Q9BXY5 557 aa22.14■■□□□ 1.13
SDF4-205ENST00000465727 ERVV-2B6SEH9 535 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 CCT5P48643 541 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 FAM169AQ9Y6X4 670 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 MYH3P11055 1940 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 GSG1L2A8MUP6 293 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 EIF3HO15372 352 aaKnown RBP eCLIP22.13■■□□□ 1.13
SDF4-205ENST00000465727 OPA1O60313 960 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 SRGAP2O75044 1071 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 PDE8BO95263 885 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 CCDC91Q7Z6B0 441 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 MMGT1Q8N4V1 131 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 NUP133Q8WUM0 1156 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 CCDC85AQ96PX6 553 aaPredicted RBP22.13■■□□□ 1.13
SDF4-205ENST00000465727 CNNM1Q9NRU3 951 aa22.13■■□□□ 1.13
SDF4-205ENST00000465727 PDS5AQ29RF7 1337 aaKnown RBP22.13■■□□□ 1.13
SDF4-205ENST00000465727 PARP1P09874 1014 aaKnown RBP22.12■■□□□ 1.13
SDF4-205ENST00000465727 RRP12Q5JTH9 1297 aaKnown RBP22.12■■□□□ 1.13
SDF4-205ENST00000465727 TTC38Q5R3I4 469 aa22.12■■□□□ 1.13
SDF4-205ENST00000465727 WDR59Q6PJI9 974 aa22.12■■□□□ 1.13
SDF4-205ENST00000465727 ZNF572Q7Z3I7 529 aaPredicted RBP22.12■■□□□ 1.13
SDF4-205ENST00000465727 CMTR1Q8N1G2 835 aaKnown RBP22.12■■□□□ 1.13
SDF4-205ENST00000465727 RETREG2Q8NC44 543 aa22.12■■□□□ 1.13
SDF4-205ENST00000465727 FAM89AQ96GI7 184 aa22.12■■□□□ 1.13
SDF4-205ENST00000465727 CAPZA3Q96KX2 299 aa22.12■■□□□ 1.13
SDF4-205ENST00000465727 PURBQ96QR8 312 aaKnown RBP22.12■■□□□ 1.13
SDF4-205ENST00000465727 SH3GL2Q99962 352 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms