RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 ZNF654Q8IZM8 581 aa13.54□□□□□ -0.24
SCN9A-204ENST00000452182 DCAF4Q8WV16 495 aa13.54□□□□□ -0.24
SCN9A-204ENST00000452182 WDR33Q9C0J8 1336 aaKnown RBP13.54□□□□□ -0.24
SCN9A-204ENST00000452182 CCL15-CCL14A0A0B4J2E2 113 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 PDHBP11177 359 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 VCAM1P19320 739 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 AK2P54819 239 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 MKRN3Q13064 507 aaKnown RBP13.53□□□□□ -0.24
SCN9A-204ENST00000452182 ZYXQ15942 572 aaKnown RBP13.53□□□□□ -0.24
SCN9A-204ENST00000452182 CCL15Q16663 113 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 KIAA1755Q5JYT7 1200 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 SYNE3Q6ZMZ3 975 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 ZNF274Q96GC6 653 aaPredicted RBP13.53□□□□□ -0.24
SCN9A-204ENST00000452182 ZCCHC17Q9NP64 241 aaKnown RBP13.53□□□□□ -0.24
SCN9A-204ENST00000452182 BRPF3Q9ULD4 1205 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 AGTPBP1Q9UPW5 1226 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 SLC45A1Q9Y2W3 748 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 NID2Q14112 1375 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 KLF18A0A0U1RQI7 1052 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 HOXA7P31268 230 aaPredicted RBP13.53□□□□□ -0.24
SCN9A-204ENST00000452182 MAP2K2P36507 400 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 SLC1A4P43007 532 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 TM4SF4P48230 202 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 HTRA3P83110 453 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 APOBRQ0VD83 1088 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 SREBF2Q12772 1141 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 DGKZQ13574 1117 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 PPP2R5BQ15173 497 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 GPATCH4Q5T3I0 446 aaKnown RBP13.53□□□□□ -0.24
SCN9A-204ENST00000452182 ANKRD23Q86SG2 305 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 SPICE1Q8N0Z3 855 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 BRI3BPQ8WY22 251 aa13.53□□□□□ -0.24
SCN9A-204ENST00000452182 PARP14Q460N5 1801 aa13.52□□□□□ -0.24
SCN9A-204ENST00000452182 ZBTB43O43298 467 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 PLA2G6O60733 806 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 BMP3P12645 472 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 MCM2P49736 904 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 VEGFBP49765 207 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 ZNF543Q08ER8 600 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 PABPC4Q13310 644 aaKnown RBP eCLIP13.52□□□□□ -0.25
SCN9A-204ENST00000452182 GRM4Q14833 912 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 ASPRV1Q53RT3 343 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 GPAT2Q6NUI2 795 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 GADL1Q6ZQY3 521 aa13.52□□□□□ -0.25
SCN9A-204ENST00000452182 PALM3A6NDB9 673 aaPredicted RBP13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L15C9J2P7 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L13C9JLJ4 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L11C9JVI0 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L18D6R9N7 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L22D6RA61 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L17D6RBQ6 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L19D6RCP7 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L20D6RJB6 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 PARP1P09874 1014 aaKnown RBP13.51□□□□□ -0.25
SCN9A-204ENST00000452182 PDIA3P30101 505 aaKnown RBP13.51□□□□□ -0.25
SCN9A-204ENST00000452182 KIF5BP33176 963 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 KIF23Q02241 960 aaPredicted RBP13.51□□□□□ -0.25
SCN9A-204ENST00000452182 USP17L24Q0WX57 530 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 TREML2Q5T2D2 321 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 PTPN18Q99952 460 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 RPAP3Q9H6T3 665 aaPredicted RBP13.51□□□□□ -0.25
SCN9A-204ENST00000452182 LIMCH1Q9UPQ0 1083 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 MYPNQ86TC9 1320 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 RLFQ13129 1914 aa13.51□□□□□ -0.25
SCN9A-204ENST00000452182 BTBD19C9JJ37 291 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 RAD21O60216 631 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 MNX1P50219 401 aaPredicted RBP13.5□□□□□ -0.25
SCN9A-204ENST00000452182 GRM1Q13255 1194 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 FAM83BQ5T0W9 1011 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 BTNL9Q6UXG8 535 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 CATSPERGQ6ZRH7 1159 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 MICU3Q86XE3 530 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 FANCBQ8NB91 859 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 CTCFLQ8NI51 663 aaPredicted RBP13.5□□□□□ -0.25
SCN9A-204ENST00000452182 NUP133Q8WUM0 1156 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 ZIC5Q96T25 663 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 MYL10Q9BUA6 226 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 MAD2L2Q9UI95 211 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 FEM1BQ9UK73 627 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 TPCN1Q9ULQ1 816 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 HPS5Q9UPZ3 1129 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 GOLGA8BA8MQT2 603 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 PITPNM1O00562 1244 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 AOC2O75106 756 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 SMARCA1P28370 1054 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 GNAQP50148 359 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 METAP2P50579 478 aaKnown RBP eCLIP13.5□□□□□ -0.25
SCN9A-204ENST00000452182 OTUD7BQ6GQQ9 843 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 RASGRP2Q7LDG7 609 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 FAM160B2Q86V87 743 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 IFNL1Q8IU54 200 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 ZSCAN31Q96LW9 406 aaPredicted RBP13.5□□□□□ -0.25
SCN9A-204ENST00000452182 NUP88Q99567 741 aaPredicted RBP13.5□□□□□ -0.25
SCN9A-204ENST00000452182 RBM28Q9NW13 759 aaKnown RBP13.5□□□□□ -0.25
SCN9A-204ENST00000452182 PNMA3Q9UL41 463 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 MTMR7Q9Y216 660 aa13.5□□□□□ -0.25
SCN9A-204ENST00000452182 CCDC196A0A1B0GTZ2 297 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 GOLGA8AA7E2F4 631 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 TMEM232C9JQI7 657 aa13.49□□□□□ -0.25
SCN9A-204ENST00000452182 PDHXO00330 501 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms