RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 MTUS1Q9ULD2 1270 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 BASP1P80723 227 aaKnown RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 ITGB3BPQ13352 177 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 SYNCQ9H7C4 482 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 IMPACTQ9P2X3 320 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 AMOTL2Q9Y2J4 779 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 SELENOOQ9BVL4 669 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 TXNDC9O14530 226 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 TEFQ10587 303 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 VCX3BQ9H321 246 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 VCX3AQ9NNX9 186 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 PPP1R1BQ9UD71 204 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 MAP2K7O14733 419 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 VASPP50552 380 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 PYGMP11217 842 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 EIF2B2P49770 351 aaKnown RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 KDM5BQ9UGL1 1544 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 MARCKSP29966 332 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 CACNA2D1P54289 1103 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 ELF3P78545 371 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 VPS52Q8N1B4 723 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 TRIM33Q9UPN9 1127 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 POTEFA5A3E0 1075 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 TRIM64CA6NLI5 447 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 G3BP1Q13283 466 aaKnown RBP eCLIP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 UBA5Q9GZZ9 404 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 OPLAHO14841 1288 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 CLUL1Q15846 466 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 RPS6KC1Q96S38 1066 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 REREQ9P2R6 1566 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 MYCP01106 439 aaPredicted RBP3.77□□□□□ -1.81
SYNE1-212ENST00000423061 MIS18BP1Q6P0N0 1132 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 MYO5CQ9NQX4 1742 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 KRT32Q14532 448 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 TNIP1Q15025 636 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 TCEAL9Q9UHQ7 104 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 MTMR7Q9Y216 660 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 PARP3Q9Y6F1 533 aa3.77□□□□□ -1.81
SYNE1-212ENST00000423061 ITIH6Q6UXX5 1313 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 LRRIQ3A6PVS8 624 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 GNAI2P04899 355 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NAT2P11245 290 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 PIAS4Q8N2W9 510 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 KDRP35968 1356 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ATP6V1G2O95670 118 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 PRR23CQ6ZRP0 262 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TTC5Q8N0Z6 440 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 RNPC3Q96LT9 517 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 C15orf41Q9Y2V0 281 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 HMOX1P09601 288 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SKIP12755 728 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NOP9Q86U38 636 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CATSPER2Q96P56 530 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD33BA6NCL7 494 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 UBE2Q1Q7Z7E8 422 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ZC3H18Q86VM9 953 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ATP11CQ8NB49 1132 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 PNMA2Q9UL42 364 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 BPIFB4P59827 614 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TWISTNBQ3B726 338 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NAA35Q5VZE5 725 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 UBLCP1Q8WVY7 318 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ATP8A1Q9Y2Q0 1164 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CFAP74Q9C0B2 1584 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SPDYE5A6NIY4 337 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SCG2P13521 617 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ERFP50548 548 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF131P52739 623 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SKOR1P84550 965 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 RSRC2Q7L4I2 434 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC110Q8TBZ0 833 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CYFIP2Q96F07 1278 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 AKR1B15C9JRZ8 316 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CUTAO60888 179 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SLC39A3Q9BRY0 314 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CARD9Q9H257 536 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 TRIM37O94972 964 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ADARP55265 1226 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ZBTB16Q05516 673 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD20A8PQ5CZ79 823 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NUTM2DQ5VT03 806 aaPredicted RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SFMBT2Q5VUG0 894 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CNBD1Q8NA66 436 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NUP153P49790 1475 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 WDR46O15213 610 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 IFNAR2P48551 515 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 MAP3K7CLP57077 242 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NGDNQ8NEJ9 315 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 H0Y3Z8 333 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 MARCH6O60337 910 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CENPKQ9BS16 269 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 NBPF14Q5TI25 921 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC102BQ68D86 513 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 LARP1Q6PKG0 1096 aaKnown RBP3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ANKZF1Q9H8Y5 726 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 PCDHGC5Q9Y5F6 944 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD62A6NC57 917 aa3.76□□□□□ -1.81
SYNE1-212ENST00000423061 DNAJC6O75061 913 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms