RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 POMGNT1Q8WZA1 660 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 MRRFQ96E11 262 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TRIM37O94972 964 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 ECE1P42892 770 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TPH2Q8IWU9 490 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 PLBD2Q8NHP8 589 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 WHAMMQ8TF30 809 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 CACTINQ8WUQ7 758 aaKnown RBP7.54□□□□□ -1.2
SCN1A-204ENST00000423058 RUNDC3BQ96NL0 473 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 USP21Q9UK80 565 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 UHRF1BP1Q6BDS2 1440 aa7.54□□□□□ -1.2
SCN1A-204ENST00000423058 TTC4O95801 387 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 HPDP32754 393 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 NRBP2Q9NSY0 501 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 CLGNO14967 610 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 RHOXF2BP0C7M4 288 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 XRCC5P13010 732 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 MMEL1Q495T6 779 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 BSPRYQ5W0U4 402 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 PIK3AP1Q6ZUJ8 805 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 AFAP1L1Q8TED9 768 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 HDAC11Q96DB2 347 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 RHOXF2Q9BQY4 288 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 DNAJC25Q9H1X3 360 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 IFNKQ9P0W0 207 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ADD3Q9UEY8 706 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ATP2B4P23634 1241 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 CCDC93Q567U6 631 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 TSHZ3Q63HK5 1081 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 IGSF22Q8N9C0 903 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 C14orf93Q9H972 538 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 OLA1Q9NTK5 396 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 HNRNPCL2B2RXH8 293 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 BUB1BO60566 1050 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 HNRNPCL1O60812 293 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 NCAPG2Q86XI2 1143 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 HELBQ8NG08 1087 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ARPP21Q9UBL0 812 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 AMFRQ9UKV5 643 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ZNF215Q9UL58 517 aaPredicted RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 A0A1B0GUA9 196 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 TMEM247A6NEH6 219 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 POLR2DO15514 142 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 PDE6CP51160 858 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ASPHQ12797 758 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 PPP2R5AQ15172 486 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 SUPT20HL1Q3ZLR7 823 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 PPP1R2P3Q6NXS1 205 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ANKRD36BP1Q96IX9 119 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 EIF2AQ9BY44 585 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 GRIN2AQ12879 1464 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 NPATQ14207 1427 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 WDR64B1ANS9 1081 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 CUTAO60888 179 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ANXA13P27216 316 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 DNM1Q05193 864 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 GOLGA8FQ08AF8 430 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 GOLGA8DPQ0D2H9 430 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 KARSQ15046 597 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 VSIG1Q86XK7 387 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 NME8Q8N427 588 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 TBC1D2Q9BYX2 928 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ARHGAP6O43182 974 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 POLR2MP0CAP2 368 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 IFNA8P32881 189 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 TTC38Q5R3I4 469 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 SCYL2Q6P3W7 929 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ANKRD44Q8N8A2 993 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 LPIN2Q92539 896 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 SECISBP2LQ93073 1101 aaKnown RBP7.53□□□□□ -1.2
SCN1A-204ENST00000423058 LRGUKQ96M69 825 aa7.53□□□□□ -1.2
SCN1A-204ENST00000423058 ADGBQ8N7X0 1667 aa7.52□□□□□ -1.2
SCN1A-204ENST00000423058 RNF8O76064 485 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 ELF1P32519 619 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 STAT1P42224 750 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 PIK3CAP42336 1068 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 LMNB2Q03252 620 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 PDZD8Q8NEN9 1154 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 GANCQ8TET4 914 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 ATP8A2Q9NTI2 1148 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 BCS1LQ9Y276 419 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 TMEM191BP0C7N4 346 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 PPP2R3AQ06190 1150 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 IFRD2Q12894 506 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-204ENST00000423058 PAK2Q13177 524 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 RPS6KA1Q15418 735 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 RSRC2Q7L4I2 434 aaKnown RBP7.52□□□□□ -1.21
SCN1A-204ENST00000423058 POTEDQ86YR6 584 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 TEX12Q9BXU0 123 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 FAM83GA6ND36 823 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 KPNA2P52292 529 aaKnown RBP7.52□□□□□ -1.21
SCN1A-204ENST00000423058 TEKT2Q9UIF3 430 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 TXNDC9O14530 226 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 MAP7D3Q8IWC1 876 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 SNX25Q9H3E2 840 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 LRWD1Q9UFC0 647 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 MAPK8IP2Q13387 824 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-204ENST00000423058 AOC3Q16853 763 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 CNKSR1Q969H4 720 aa7.52□□□□□ -1.21
SCN1A-204ENST00000423058 ZFP91Q96JP5 570 aaPredicted RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms