RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MYH8P13535 1937 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 LIFRP42702 1097 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 LAMA4Q16363 1823 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 CYP4F22Q6NT55 531 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 DGKHQ86XP1 1220 aa10.69□□□□□ -0.7
USP4-202ENST00000351842 HTTP42858 3142 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 ZNF646O15015 1829 aaPredicted RBP10.68□□□□□ -0.7
USP4-202ENST00000351842 SSC5DA1L4H1 1573 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 CTDNEP1O95476 244 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 MCM2P49736 904 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 TRIM22Q8IYM9 498 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 TMTC2Q8N394 836 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 IL27Q8NEV9 243 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 ROBO3Q96MS0 1386 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 ITGBL1O95965 494 aaPredicted RBP10.68□□□□□ -0.7
USP4-202ENST00000351842 PCP11498 1178 aaKnown RBP10.68□□□□□ -0.7
USP4-202ENST00000351842 SSRP1Q08945 709 aaKnown RBP10.68□□□□□ -0.7
USP4-202ENST00000351842 TREML2Q5T2D2 321 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 RASGRP4Q8TDF6 673 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 HOOK2Q96ED9 719 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 WNK4Q96J92 1243 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 ZSCAN31Q96LW9 406 aaPredicted RBP10.68□□□□□ -0.7
USP4-202ENST00000351842 ZIC5Q96T25 663 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 RPAP3Q9H6T3 665 aaPredicted RBP10.68□□□□□ -0.7
USP4-202ENST00000351842 TMOD4Q9NZQ9 345 aa10.68□□□□□ -0.7
USP4-202ENST00000351842 PITPNM2Q9BZ72 1349 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 PFKFB2O60825 505 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 FGRP09769 529 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 CYP2C8P10632 490 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 BMP3P12645 472 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 KIF5BP33176 963 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 NSUN7Q8NE18 718 aaKnown RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 SNX21Q969T3 373 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 PGBD1Q96JS3 809 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 ALG1Q9BT22 464 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 SH2B1Q9NRF2 756 aaPredicted RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 FAM217BQ9NTX9 383 aaPredicted RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 NPM3O75607 178 aaKnown RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 VCAM1P19320 739 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 GDPD2Q9HCC8 539 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 GOPCQ9HD26 462 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 CYTH3O43739 400 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 NBR1Q14596 966 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 SGMS1Q86VZ5 419 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 SMCR8Q8TEV9 937 aaPredicted RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 SEC63Q9UGP8 760 aaKnown RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 MAD2L2Q9UI95 211 aa10.67□□□□□ -0.7
USP4-202ENST00000351842 DDX49Q9Y6V7 483 aaKnown RBP10.67□□□□□ -0.7
USP4-202ENST00000351842 IGSF3O75054 1194 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 TOMM70O94826 608 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 SMC1BQ8NDV3 1235 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 ZNF274Q96GC6 653 aaPredicted RBP10.66□□□□□ -0.7
USP4-202ENST00000351842 C8orf76Q96K31 380 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 ZBTB22O15209 634 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 BACE1P56817 501 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 ADGRF4Q8IZF3 695 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 VCPKMTQ9H867 229 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 EMILIN3Q9NT22 766 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 PPP2R3BQ9Y5P8 575 aa10.66□□□□□ -0.7
USP4-202ENST00000351842 CCDC196A0A1B0GTZ2 297 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 TBC1D12O60347 775 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 SYT1P21579 422 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 GJA5P36382 358 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 STAT2P52630 851 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 IRX3P78415 501 aaPredicted RBP10.65□□□□□ -0.7
USP4-202ENST00000351842 TRIM29Q14134 588 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 ATG4CQ96DT6 458 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 AS3MTQ9HBK9 375 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 RAVER2Q9HCJ3 691 aaKnown RBP10.65□□□□□ -0.7
USP4-202ENST00000351842 CCL15-CCL14A0A0B4J2E2 113 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 UBXN2AP68543 259 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 CCL15Q16663 113 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 SLC35G1Q2M3R5 365 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 NYAP2Q9P242 653 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 TSKSQ9UJT2 592 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 TMX2Q9Y320 296 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 SMCHD1A6NHR9 2005 aa10.65□□□□□ -0.7
USP4-202ENST00000351842 AOC2O75106 756 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 ALAS1P13196 640 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 FDPSP14324 419 aaKnown RBP10.65□□□□□ -0.71
USP4-202ENST00000351842 NAPAP54920 295 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 ZNF543Q08ER8 600 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 TMTC3Q6ZXV5 915 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 FCHSD1Q86WN1 690 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 ERO1BQ86YB8 467 aa10.65□□□□□ -0.71
USP4-202ENST00000351842 TFIP11Q9UBB9 837 aaKnown RBP10.65□□□□□ -0.71
USP4-202ENST00000351842 HOXA13P31271 388 aaPredicted RBP10.64□□□□□ -0.71
USP4-202ENST00000351842 MMP14P50281 582 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 NLRP5P59047 1200 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 CCAR1Q8IX12 1150 aaKnown RBP10.64□□□□□ -0.71
USP4-202ENST00000351842 AGBL1Q96MI9 1066 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 SH2D4AQ9H788 454 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 IGKV6D-41A0A0C4DH26 115 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 DDAH1O94760 285 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 NR5A1Q13285 461 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 CDC37Q16543 378 aaPredicted RBP10.64□□□□□ -0.71
USP4-202ENST00000351842 SAPCD2Q86UD0 394 aa10.64□□□□□ -0.71
USP4-202ENST00000351842 RRP36Q96EU6 259 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms