RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 RANBP1P43487 201 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RAP1GDS1P52306 607 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RAD51AP2Q09MP3 1159 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 CCDC65Q8IXS2 484 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 ROBO2Q9HCK4 1378 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 HEG1Q9ULI3 1381 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 SLIT3O75094 1523 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 HPDP32754 393 aaPredicted RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 LONP1P36776 959 aaKnown RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 PRPHP41219 470 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 ST5P78524 1137 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 TRIM28Q13263 835 aaKnown RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 IWS1Q96ST2 819 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 GNL3LQ9NVN8 582 aaKnown RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 SLC12A7Q9Y666 1083 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 A0A0D9SFI3 127 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 E7EWF7 191 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 TRIM37O94972 964 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 LMOD1P29536 600 aaPredicted RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 CALCOCO2Q13137 446 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 POSTNQ15063 836 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 ARL6IP4Q66PJ3 421 aaKnown RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 PHLDB2Q86SQ0 1253 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 C17orf53Q8N3J3 647 aaPredicted RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 OR8K1Q8NGG5 319 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 MRC1P22897 1456 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 NPHP4O75161 1426 aaPredicted RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 CACNA1FO60840 1977 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 A0A1B0GTH6 734 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RHOXF2BP0C7M4 288 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 FOSL2P15408 326 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 ATP2A2P16615 1042 aaKnown RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 PTPREP23469 700 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 EVA1CP58658 441 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 MAP3K12Q12852 859 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 VWA3BQ502W6 1294 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 TEX2Q8IWB9 1127 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RHOXF2Q9BQY4 288 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RAB34Q9BZG1 259 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 KDM6AO15550 1401 aaPredicted RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 N4BP3O15049 544 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 DNM2P50570 870 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 EPHB4P54760 987 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 FIGNQ5HY92 759 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 KRT40Q6A162 431 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 ARMCX6Q7L4S7 300 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RASGRP2Q7LDG7 609 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 SDCCAG8Q86SQ7 713 aaPredicted RBP7.1□□□□□ -1.27
VPS35-201ENST00000299138 TADA2BQ86TJ2 420 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 NOSTRINQ8IVI9 506 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 IGSF22Q8N9C0 903 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 IFT81Q8WYA0 676 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 CAPZA3Q96KX2 299 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 PARD6BQ9BYG5 372 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 UBA5Q9GZZ9 404 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 RIPOR2Q9Y4F9 1068 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 STK24Q9Y6E0 443 aa7.1□□□□□ -1.27
VPS35-201ENST00000299138 PAK2Q13177 524 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 BICD1Q96G01 975 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 AATFQ9NY61 560 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS35-201ENST00000299138 CPDO75976 1380 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 HSPA1LP34931 641 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 CORO7P57737 925 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 SCRN1Q12765 414 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 MCUR1Q96AQ8 359 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 RNF26Q9BY78 433 aaPredicted RBP7.09□□□□□ -1.27
VPS35-201ENST00000299138 A0A087WZG4 1122 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 NEURL1BA8MQ27 555 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 TNNC1P63316 161 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 CCDC122Q5T0U0 273 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 VPS52Q8N1B4 723 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 LMBR1Q8WVP7 490 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 VTI1AQ96AJ9 217 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 FUT8Q9BYC5 575 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 CCDC8Q9H0W5 538 aaPredicted RBP7.09□□□□□ -1.27
VPS35-201ENST00000299138 PUF60Q9UHX1 559 aaKnown RBP7.09□□□□□ -1.27
VPS35-201ENST00000299138 NDUFAB1O14561 156 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 GTPBP6O43824 516 aaPredicted RBP7.09□□□□□ -1.27
VPS35-201ENST00000299138 CEP104O60308 925 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 SERPINI2O75830 405 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 LARGE1O95461 756 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 TBC1D8O95759 1140 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 KRT13P13646 458 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 RINLQ6ZS11 566 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 UBAC1Q9BSL1 405 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 SLC24A3Q9HC58 644 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 SAR1BQ9Y6B6 198 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 PSMD14O00487 310 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 KRT28Q7Z3Y7 464 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 ZNF287Q9HBT7 754 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 L1RE1Q9UN81 338 aa7.09□□□□□ -1.27
VPS35-201ENST00000299138 TBX2Q13207 712 aaPredicted RBP7.09□□□□□ -1.28
VPS35-201ENST00000299138 WDR78Q5VTH9 848 aa7.09□□□□□ -1.28
VPS35-201ENST00000299138 RAB11FIP4Q86YS3 637 aa7.09□□□□□ -1.28
VPS35-201ENST00000299138 ADAMTS13Q76LX8 1427 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 ADD1P35611 737 aaKnown RBP7.08□□□□□ -1.28
VPS35-201ENST00000299138 POLE2P56282 527 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 CCDC25Q86WR0 208 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 IFT20Q8IY31 132 aa7.08□□□□□ -1.28
VPS35-201ENST00000299138 ZCRB1Q8TBF4 217 aaKnown RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms