RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 E2F4Q16254 413 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 ZNF772Q68DY9 489 aaPredicted RBP18.61■□□□□ 0.57
HOXD3-201ENST00000249440 KIF20AO95235 890 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 CALML3P27482 149 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 PRDX5P30044 214 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 PBX1P40424 430 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 EVX2Q03828 476 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 SMYD4Q8IYR2 804 aaPredicted RBP18.61■□□□□ 0.57
HOXD3-201ENST00000249440 WDR24Q96S15 920 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 TFCP2L1Q9NZI6 479 aa18.61■□□□□ 0.57
HOXD3-201ENST00000249440 NT5C2P49902 561 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 RBL2Q08999 1139 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 ARL6IP4Q66PJ3 421 aaKnown RBP18.6■□□□□ 0.57
HOXD3-201ENST00000249440 XDHP47989 1333 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 MAST2Q6P0Q8 1798 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 KIAA1551Q9HCM1 1747 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 CNTNAP4Q9C0A0 1308 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 MCM7P33993 719 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 SETDB2Q96T68 719 aa18.6■□□□□ 0.57
HOXD3-201ENST00000249440 SPTY2D1Q68D10 685 aaPredicted RBP18.59■□□□□ 0.57
HOXD3-201ENST00000249440 PDXDC2PQ6P474 469 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 KRT27Q7Z3Y8 459 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 CNGA4Q8IV77 575 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 STAMQ92783 540 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 DESI2Q9BSY9 194 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 KAT14Q9H8E8 782 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 MCM9Q9NXL9 1143 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 MRFAP1Q9Y605 127 aa18.59■□□□□ 0.57
HOXD3-201ENST00000249440 GTPBP6O43824 516 aaPredicted RBP18.58■□□□□ 0.57
HOXD3-201ENST00000249440 CYP2D6P10635 497 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 LONP1P36776 959 aaKnown RBP18.58■□□□□ 0.57
HOXD3-201ENST00000249440 RCSD1Q6JBY9 416 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 NBPF5PQ86XG9 351 aaPredicted RBP18.58■□□□□ 0.57
HOXD3-201ENST00000249440 CPLX3Q8WVH0 158 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 BLZF1Q9H2G9 400 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 SH3GLB2Q9NR46 395 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 RMND1Q9NWS8 449 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 CTNND2Q9UQB3 1225 aa18.58■□□□□ 0.57
HOXD3-201ENST00000249440 ITIH6Q6UXX5 1313 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 SOWAHDA6NJG2 315 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 TRIM37O94972 964 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 TXLNAP40222 546 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 RRAGBQ5VZM2 374 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 TMCO3Q6UWJ1 677 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 DGKHQ86XP1 1220 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 KIFC2Q96AC6 838 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 CCDC51Q96ER9 411 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 NARFQ9UHQ1 456 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 RWDD2AQ9UIY3 292 aa18.58■□□□□ 0.56
HOXD3-201ENST00000249440 GOLGB1Q14789 3259 aaKnown RBP18.58■□□□□ 0.56
HOXD3-201ENST00000249440 LRRC10BA6NIK2 292 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 MFAP3LO75121 409 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 RXRBP28702 533 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 SPAG1Q07617 926 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 MTF1Q14872 753 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 DZIP1Q86YF9 867 aaKnown RBP18.57■□□□□ 0.56
HOXD3-201ENST00000249440 BLIDQ8IZY5 108 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 NHSQ6T4R5 1651 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 IL17AQ16552 155 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 TPTE2Q6XPS3 522 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 ANKRD20A12PQ8NF67 263 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 LIMA1Q9UHB6 759 aaKnown RBP18.57■□□□□ 0.56
HOXD3-201ENST00000249440 ZHX1Q9UKY1 873 aaPredicted RBP18.57■□□□□ 0.56
HOXD3-201ENST00000249440 ADGRG1Q9Y653 693 aa18.57■□□□□ 0.56
HOXD3-201ENST00000249440 ZBTB22O15209 634 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 VEGFAP15692 232 aaPredicted RBP18.56■□□□□ 0.56
HOXD3-201ENST00000249440 CASP14P31944 242 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 TFAP4Q01664 338 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 PPP2R3AQ06190 1150 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 PAK1Q13153 545 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 KARSQ15046 597 aaKnown RBP18.56■□□□□ 0.56
HOXD3-201ENST00000249440 ZNF658Q5TYW1 1059 aaPredicted RBP18.56■□□□□ 0.56
HOXD3-201ENST00000249440 CCDC12Q8WUD4 166 aaPredicted RBP18.56■□□□□ 0.56
HOXD3-201ENST00000249440 MRPL44Q9H9J2 332 aaKnown RBP18.56■□□□□ 0.56
HOXD3-201ENST00000249440 PCDHA4Q9UN74 947 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 FHOD1Q9Y613 1164 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 IGSF3O75054 1194 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 RAD9BQ6WBX8 426 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 GPR161Q8N6U8 529 aaKnown RBP18.56■□□□□ 0.56
HOXD3-201ENST00000249440 PNMA1Q8ND90 353 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 MTRQ99707 1265 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 MYH8P13535 1937 aa18.56■□□□□ 0.56
HOXD3-201ENST00000249440 N4BP3O15049 544 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 USP17L8P0C7I0 530 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 GNAQP50148 359 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 KRT31Q15323 416 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 CCDC178Q5BJE1 867 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 C12orf60Q5U649 245 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 RASGRP2Q7LDG7 609 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 AMIGO3Q86WK7 504 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 ZPR1O75312 459 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 ZRANB2O95218 330 aaKnown RBP eCLIP18.55■□□□□ 0.56
HOXD3-201ENST00000249440 RPN1P04843 607 aaKnown RBP18.55■□□□□ 0.56
HOXD3-201ENST00000249440 GYPCP04921 128 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 CCT6AP40227 531 aaKnown RBP18.55■□□□□ 0.56
HOXD3-201ENST00000249440 USP5P45974 858 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 TERF2Q15554 542 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 ZNF771Q7L3S4 317 aaPredicted RBP18.55■□□□□ 0.56
HOXD3-201ENST00000249440 C4orf32Q8N8J7 132 aa18.55■□□□□ 0.56
HOXD3-201ENST00000249440 ANKS1AQ92625 1134 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms