RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 AS3MTQ9HBK9 375 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 TMOD4Q9NZQ9 345 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 ECM29Q5VYK3 1845 aa10.03□□□□□ -0.8
VPS4B-201ENST00000238497 IFIT3O14879 490 aaKnown RBP10.02□□□□□ -0.8
VPS4B-201ENST00000238497 MCM5P33992 734 aa10.02□□□□□ -0.8
VPS4B-201ENST00000238497 CCDC173Q0VFZ6 552 aa10.02□□□□□ -0.8
VPS4B-201ENST00000238497 MTMR2Q13614 643 aa10.02□□□□□ -0.8
VPS4B-201ENST00000238497 NOL9Q5SY16 702 aaKnown RBP10.02□□□□□ -0.8
VPS4B-201ENST00000238497 CCDC183Q5T5S1 534 aa10.02□□□□□ -0.8
VPS4B-201ENST00000238497 ZSCAN25Q6NSZ9 544 aa10.02□□□□□ -0.8
VPS4B-201ENST00000238497 FBXO46Q6PJ61 603 aaPredicted RBP10.02□□□□□ -0.8
VPS4B-201ENST00000238497 ARHGAP39Q9C0H5 1083 aa10.02□□□□□ -0.8
VPS4B-201ENST00000238497 CYP2D6P10635 497 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 PSMC4P43686 418 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 ZNF445P59923 1031 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 IRX3P78415 501 aaPredicted RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 RRP1BQ14684 758 aaKnown RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 ZRSR1Q15695 479 aaKnown RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 CERKLQ49MI3 558 aaPredicted RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 CERS3Q8IU89 383 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 NUP62CLQ9H1M0 184 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 ARAP2Q8WZ64 1704 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 TESPA1A2RU30 521 aaPredicted RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 NPM3O75607 178 aaKnown RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 HMGB1P09429 215 aaKnown RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 PDIA3P30101 505 aaKnown RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 PLCD1P51178 756 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 PKN2Q16513 984 aaKnown RBP10.02□□□□□ -0.81
VPS4B-201ENST00000238497 WDR78Q5VTH9 848 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 C8orf76Q96K31 380 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 SDF4Q9BRK5 362 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 KCNH4Q9UQ05 1017 aa10.02□□□□□ -0.81
VPS4B-201ENST00000238497 CYP2D7A0A087X1C5 515 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 SMIM22K7EJ46 135 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 ADD2P35612 726 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 TMEM67Q5HYA8 995 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 SYNE3Q6ZMZ3 975 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 CLEC17AQ6ZS10 378 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 SLC44A5Q8NCS7 719 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 DSCC1Q9BVC3 393 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 SENP2Q9HC62 589 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 ISY1Q9ULR0 285 aaKnown RBP10.01□□□□□ -0.81
VPS4B-201ENST00000238497 AFG3L2Q9Y4W6 797 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 TBC1D12O60347 775 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 RANBP6O60518 1105 aaKnown RBP10.01□□□□□ -0.81
VPS4B-201ENST00000238497 MARCKSP29966 332 aaPredicted RBP10.01□□□□□ -0.81
VPS4B-201ENST00000238497 SLC9C1Q4G0N8 1177 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 ANKRD23Q86SG2 305 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 ANKRD13CQ8N6S4 541 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS4B-201ENST00000238497 DYNLL2Q96FJ2 89 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 RIOK1Q9BRS2 568 aaKnown RBP10.01□□□□□ -0.81
VPS4B-201ENST00000238497 ZBTB21Q9ULJ3 1066 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 KIF3AQ9Y496 699 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 ATRNL1Q5VV63 1379 aa10.01□□□□□ -0.81
VPS4B-201ENST00000238497 BIN1O00499 593 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 ZBTB22O15209 634 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 EPB41L2O43491 1005 aaKnown RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 ZFYP08048 801 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 STK38Q15208 465 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 ABCB5Q2M3G0 1257 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 TREML2Q5T2D2 321 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 RAET1EQ8TD07 263 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 THSD7BQ9C0I4 1608 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 RFX7Q2KHR2 1363 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 USP17L12C9JPN9 530 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 USP17L21D6R901 530 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 NR1I2O75469 434 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 EVX2Q03828 476 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 SASS6Q6UVJ0 657 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 LEO1Q8WVC0 666 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 PAGR1Q9BTK6 254 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 DNAJC18Q9H819 358 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 A0A0G2JLL6 359 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 CCDC69A6NI79 296 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 USP17L10C9JJH3 530 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 MLLT1Q03111 559 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 PRRT2Q7Z6L0 340 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 LUZP1Q86V48 1076 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 C17orf53Q8N3J3 647 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 NSUN7Q8NE18 718 aaKnown RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 DCP1AQ9NPI6 582 aaPredicted RBP10□□□□□ -0.81
VPS4B-201ENST00000238497 PNMA3Q9UL41 463 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 PTCH2Q9Y6C5 1203 aa10□□□□□ -0.81
VPS4B-201ENST00000238497 OSBPP22059 807 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 METAP2P50579 478 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS4B-201ENST00000238497 LACTBP83111 547 aaPredicted RBP9.99□□□□□ -0.81
VPS4B-201ENST00000238497 PABPC4Q13310 644 aaKnown RBP eCLIP9.99□□□□□ -0.818e-7■■□□□ 12
VPS4B-201ENST00000238497 CCDC73Q6ZRK6 1079 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 NKX2-3Q8TAU0 364 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 SH3TC2Q8TF17 1288 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 SLC26A6Q9BXS9 759 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 SCAND2PQ9GZW5 306 aaPredicted RBP9.99□□□□□ -0.81
VPS4B-201ENST00000238497 TTC12Q9H892 705 aaPredicted RBP9.99□□□□□ -0.81
VPS4B-201ENST00000238497 TCHHQ07283 1943 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 A0A1B0GVL5 298 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 ERICH2A1L162 156 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 TNPO2O14787 897 aaKnown RBP9.99□□□□□ -0.81
VPS4B-201ENST00000238497 ADCY5O95622 1261 aa9.99□□□□□ -0.81
VPS4B-201ENST00000238497 JAG1P78504 1218 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms