RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 NMT2O60551 498 aa14□□□□□ -0.17
NUP88-201ENST00000225696 PMS1P54277 932 aaKnown RBP14□□□□□ -0.17
NUP88-201ENST00000225696 KCNJ12Q14500 433 aa14□□□□□ -0.17
NUP88-201ENST00000225696 TTC38Q5R3I4 469 aa14□□□□□ -0.17
NUP88-201ENST00000225696 CYP26C1Q6V0L0 522 aa14□□□□□ -0.17
NUP88-201ENST00000225696 NELFBQ8WX92 580 aa14□□□□□ -0.17
NUP88-201ENST00000225696 RIN2Q8WYP3 895 aaPredicted RBP14□□□□□ -0.17
NUP88-201ENST00000225696 MMS19Q96T76 1030 aa14□□□□□ -0.17
NUP88-201ENST00000225696 MYH2Q9UKX2 1941 aa14□□□□□ -0.17
NUP88-201ENST00000225696 ERLIN1O75477 346 aa14□□□□□ -0.17
NUP88-201ENST00000225696 ATP1A1P05023 1023 aaKnown RBP14□□□□□ -0.17
NUP88-201ENST00000225696 SLC5A1P13866 664 aa14□□□□□ -0.17
NUP88-201ENST00000225696 AKAP17AQ02040 695 aaKnown RBP14□□□□□ -0.17
NUP88-201ENST00000225696 WHAMMP3Q1A5X7 153 aa14□□□□□ -0.17
NUP88-201ENST00000225696 TMTC2Q8N394 836 aa14□□□□□ -0.17
NUP88-201ENST00000225696 FERMT2Q96AC1 680 aa14□□□□□ -0.17
NUP88-201ENST00000225696 CCDC51Q96ER9 411 aa14□□□□□ -0.17
NUP88-201ENST00000225696 LRP2BPQ9P2M1 347 aa14□□□□□ -0.17
NUP88-201ENST00000225696 RSPH14Q9UHP6 348 aa14□□□□□ -0.17
NUP88-201ENST00000225696 MYH3P11055 1940 aa14□□□□□ -0.17
NUP88-201ENST00000225696 MROH5Q6ZUA9 1318 aa14□□□□□ -0.17
NUP88-201ENST00000225696 POTEB2H3BUK9 544 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 NDUFA10O95299 355 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 CYP19A1P11511 503 aaPredicted RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 CYP7A1P22680 504 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 MCM7P33993 719 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 PRCPP42785 496 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 ATP2C1P98194 919 aaPredicted RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 UBXN1Q04323 297 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 TROAPQ12815 778 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 CT47A1Q5JQC4 288 aaPredicted RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 WDR59Q6PJI9 974 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 PIK3AP1Q6ZUJ8 805 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 GSPT2Q8IYD1 628 aaKnown RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 IQUBQ8NA54 791 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 ZSCAN10Q96SZ4 725 aaPredicted RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 EPN1Q9Y6I3 576 aaPredicted RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 RCCD1A6NED2 376 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 PRPF3O43395 683 aaKnown RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 SYF2O95926 243 aaKnown RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 HERVK_113P62684 666 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 PAK1Q13153 545 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 LRRC31Q6UY01 552 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 TRAPPC11Q7Z392 1133 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 CAPZA3Q96KX2 299 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 RASSF4Q9H2L5 321 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 FAM204AQ9H8W3 233 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 ABCF2Q9UG63 623 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 RWDD2AQ9UIY3 292 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.99□□□□□ -0.17
NUP88-201ENST00000225696 DOCK2Q92608 1830 aa13.99□□□□□ -0.17
NUP88-201ENST00000225696 BCORQ6W2J9 1755 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 MYBL2P10244 700 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 DYNLL1P63167 89 aaKnown RBP13.98□□□□□ -0.17
NUP88-201ENST00000225696 PIP4K2BP78356 416 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 SRBD1Q8N5C6 995 aaKnown RBP13.98□□□□□ -0.17
NUP88-201ENST00000225696 CARD10Q9BWT7 1032 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 DUSP10Q9Y6W6 482 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 NKRFO15226 690 aaKnown RBP eCLIP13.98□□□□□ -0.17
NUP88-201ENST00000225696 ZNF185O15231 689 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 EIF3JO75822 258 aaKnown RBP13.98□□□□□ -0.17
NUP88-201ENST00000225696 GNAT2P19087 354 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 IFIT1BQ5T764 474 aaKnown RBP13.98□□□□□ -0.17
NUP88-201ENST00000225696 SUSD4Q5VX71 490 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 LEKR1Q6ZMV7 388 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 ESR2Q92731 530 aa13.98□□□□□ -0.17
NUP88-201ENST00000225696 ZC3H4Q9UPT8 1303 aaKnown RBP13.97□□□□□ -0.17
NUP88-201ENST00000225696 PP2D1A8MPX8 630 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 RPN1P04843 607 aaKnown RBP13.97□□□□□ -0.17
NUP88-201ENST00000225696 PARP1P09874 1014 aaKnown RBP13.97□□□□□ -0.17
NUP88-201ENST00000225696 KLK7P49862 253 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 RCAN1P53805 252 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 TUBB2AQ13885 445 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 SKIDA1Q1XH10 827 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 WDR93Q6P2C0 686 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 MSL3Q8N5Y2 521 aaKnown RBP13.97□□□□□ -0.17
NUP88-201ENST00000225696 TUBB2BQ9BVA1 445 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 LACRTQ9GZZ8 138 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 RNF41Q9H4P4 317 aaPredicted RBP13.97□□□□□ -0.17
NUP88-201ENST00000225696 COL4A1P02462 1669 aa13.97□□□□□ -0.17
NUP88-201ENST00000225696 PDE2AO00408 941 aaPredicted RBP13.96□□□□□ -0.17
NUP88-201ENST00000225696 RNF40O75150 1001 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 XBP1P17861 261 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 USP14P54578 494 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 ZNF658Q5TYW1 1059 aaPredicted RBP13.96□□□□□ -0.17
NUP88-201ENST00000225696 DZIP3Q86Y13 1208 aaKnown RBP13.96□□□□□ -0.17
NUP88-201ENST00000225696 ZNF34Q8IZ26 560 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 PLCD3Q8N3E9 789 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 FAM71BQ8TC56 605 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 LRRC15Q8TF66 581 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 ZNF384Q8TF68 577 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 PLIN2Q99541 437 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 AGPAT5Q9NUQ2 364 aa13.96□□□□□ -0.17
NUP88-201ENST00000225696 CWC15Q9P013 229 aaKnown RBP13.96□□□□□ -0.17
NUP88-201ENST00000225696 BAZ2AQ9UIF9 1905 aaKnown RBP13.96□□□□□ -0.17
NUP88-201ENST00000225696 RASSF10A6NK89 507 aa13.96□□□□□ -0.18
NUP88-201ENST00000225696 PES1O00541 588 aaKnown RBP13.96□□□□□ -0.18
NUP88-201ENST00000225696 GTPBP6O43824 516 aaPredicted RBP13.96□□□□□ -0.18
NUP88-201ENST00000225696 PRPF6O94906 941 aaKnown RBP13.96□□□□□ -0.18
NUP88-201ENST00000225696 TMTC3Q6ZXV5 915 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms