RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 MKL1Q969V6 931 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 UBAC1Q9BSL1 405 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 C22orf23Q9BZE7 217 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 TM6SF1Q9BZW5 370 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 SH2D4AQ9H788 454 aa23.2■■□□□ 1.3
UPF3A-211ENST00000618700 UPF2Q9HAU5 1272 aaKnown RBP23.2■■□□□ 1.3
UPF3A-211ENST00000618700 TESPA1A2RU30 521 aaPredicted RBP23.19■■□□□ 1.3
UPF3A-211ENST00000618700 C19orf81C9J6K1 198 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 PRC1O43663 620 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 PSMA5P28066 241 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 GTF2A2P52657 109 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 EXOSC10Q01780 885 aaKnown RBP23.19■■□□□ 1.3
UPF3A-211ENST00000618700 GRM1Q13255 1194 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 MOGSQ13724 837 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 CHST3Q7LGC8 479 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 DGKHQ86XP1 1220 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 ANKS1AQ92625 1134 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 C12orf42Q96LP6 360 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 TTC14Q96N46 770 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 FEZ1Q99689 392 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 CLIP2Q9UDT6 1046 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 STX8Q9UNK0 236 aa23.19■■□□□ 1.3
UPF3A-211ENST00000618700 MANSC4A6NHS7 340 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-211ENST00000618700 AOC2O75106 756 aa23.18■■□□□ 1.3
UPF3A-211ENST00000618700 CASTP20810 708 aaKnown RBP23.18■■□□□ 1.3
UPF3A-211ENST00000618700 HMGCS2P54868 508 aa23.18■■□□□ 1.3
UPF3A-211ENST00000618700 ATP2B2Q01814 1243 aa23.18■■□□□ 1.3
UPF3A-211ENST00000618700 DHX32Q7L7V1 743 aaKnown RBP23.18■■□□□ 1.3
UPF3A-211ENST00000618700 TBC1D32Q96NH3 1257 aa23.18■■□□□ 1.3
UPF3A-211ENST00000618700 ZIC5Q96T25 663 aa23.18■■□□□ 1.3
UPF3A-211ENST00000618700 ZSWIM6Q9HCJ5 1215 aa23.18■■□□□ 1.3
UPF3A-211ENST00000618700 TOP1P11387 765 aaKnown RBP23.17■■□□□ 1.3
UPF3A-211ENST00000618700 CETPP11597 493 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 USP14P54578 494 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 DGKZQ13574 1117 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 SART3Q15020 963 aaKnown RBP23.17■■□□□ 1.3
UPF3A-211ENST00000618700 BLOC1S2Q6QNY1 142 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 USP17L2Q6R6M4 530 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 LRRC47Q8N1G4 583 aaKnown RBP23.17■■□□□ 1.3
UPF3A-211ENST00000618700 PROCA1Q8NCQ7 364 aaPredicted RBP23.17■■□□□ 1.3
UPF3A-211ENST00000618700 IGDCC4Q8TDY8 1250 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 BRI3BPQ8WY22 251 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 TMEM87BQ96K49 555 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 TMEM47Q9BQJ4 181 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 VCPKMTQ9H867 229 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 EMILIN3Q9NT22 766 aa23.17■■□□□ 1.3
UPF3A-211ENST00000618700 SH2B2O14492 632 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-211ENST00000618700 IFIT3O14879 490 aaKnown RBP23.16■■□□□ 1.3
UPF3A-211ENST00000618700 CPA1P15085 419 aa23.16■■□□□ 1.3
UPF3A-211ENST00000618700 RPS6KB1P23443 525 aa23.16■■□□□ 1.3
UPF3A-211ENST00000618700 KIF23Q02241 960 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-211ENST00000618700 ZYXQ15942 572 aaKnown RBP23.16■■□□□ 1.3
UPF3A-211ENST00000618700 KIAA1755Q5JYT7 1200 aa23.16■■□□□ 1.3
UPF3A-211ENST00000618700 GMCL1P1Q8NEA9 526 aa23.16■■□□□ 1.3
UPF3A-211ENST00000618700 CCL15-CCL14A0A0B4J2E2 113 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 MAP2K2P36507 400 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 CCL15Q16663 113 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 TMEM67Q5HYA8 995 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 RUFY3Q7L099 469 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 TCEANC2Q96MN5 208 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 KIF2CQ99661 725 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 LY9Q9HBG7 655 aa23.15■■□□□ 1.3
UPF3A-211ENST00000618700 ERICH2A1L162 156 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 INHBEP58166 350 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 SREBF2Q12772 1141 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 IFIT1BQ5T764 474 aaKnown RBP23.14■■□□□ 1.29
UPF3A-211ENST00000618700 FASTKD5Q7L8L6 764 aaKnown RBP23.14■■□□□ 1.29
UPF3A-211ENST00000618700 LPAR1Q92633 364 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 LRRC2Q9BYS8 371 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 UPF3BQ9BZI7 483 aaKnown RBP23.14■■□□□ 1.29
UPF3A-211ENST00000618700 SENP2Q9HC62 589 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 GOPCQ9HD26 462 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 GPHNQ9NQX3 736 aaPredicted RBP23.14■■□□□ 1.29
UPF3A-211ENST00000618700 TMOD4Q9NZQ9 345 aa23.14■■□□□ 1.29
UPF3A-211ENST00000618700 F5H6K3 240 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 NDUFB10O96000 172 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 VCAM1P19320 739 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 KLRC3Q07444 240 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 WTAPQ15007 396 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 GPAT2Q6NUI2 795 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 GADL1Q6ZQY3 521 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 FBXL16Q8N461 479 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 PTPN18Q99952 460 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 AGTPBP1Q9UPW5 1226 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 CYP46A1Q9Y6A2 500 aa23.13■■□□□ 1.29
UPF3A-211ENST00000618700 BTBD19C9JJ37 291 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 LIFRP42702 1097 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 TM4SF4P48230 202 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 TREML2Q5T2D2 321 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 GMCL1Q96IK5 515 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 AGXT2Q9BYV1 514 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 KAT14Q9H8E8 782 aa23.12■■□□□ 1.29
UPF3A-211ENST00000618700 IGF2BP3O00425 579 aaKnown RBP eCLIP23.11■■□□□ 1.29
UPF3A-211ENST00000618700 ANKRD23Q86SG2 305 aa23.11■■□□□ 1.29
UPF3A-211ENST00000618700 SGMS1Q86VZ5 419 aa23.11■■□□□ 1.29
UPF3A-211ENST00000618700 SPICE1Q8N0Z3 855 aa23.11■■□□□ 1.29
UPF3A-211ENST00000618700 PNMA1Q8ND90 353 aa23.11■■□□□ 1.29
UPF3A-211ENST00000618700 WDR46O15213 610 aaKnown RBP23.1■■□□□ 1.29
UPF3A-211ENST00000618700 HSPA1AP0DMV8 641 aaKnown RBP23.1■■□□□ 1.29
UPF3A-211ENST00000618700 HSPA1BP0DMV9 641 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms