RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 H3BQF6 201 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 SRGAP1Q7Z6B7 1085 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 TMTC2Q8N394 836 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 FAM53CQ9NYF3 392 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 KRT31Q15323 416 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 FKBP15Q5T1M5 1219 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 CTCFLQ8NI51 663 aaPredicted RBP17.24■□□□□ 0.35
UPF1-204ENST00000596842 GPKOWQ92917 476 aaPredicted RBP eCLIP17.24■□□□□ 0.35
UPF1-204ENST00000596842 ABCB6Q9NP58 842 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 ANKRD65E5RJM6 399 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 MFAP3LO75121 409 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 GYPCP04921 128 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 KCNQ4P56696 695 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 CHRNDQ07001 517 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 E2F4Q16254 413 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 TSR1Q2NL82 804 aaKnown RBP17.24■□□□□ 0.35
UPF1-204ENST00000596842 HSP90B2PQ58FF3 399 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 BANK1Q8NDB2 785 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 CHP1Q99653 195 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 PLEKHA4Q9H4M7 779 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 MROH5Q6ZUA9 1318 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 CTAGE15A4D2H0 777 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 RNF225M0QZC1 329 aaPredicted RBP17.24■□□□□ 0.35
UPF1-204ENST00000596842 CTAGE8P0CG41 777 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 CYP19A1P11511 503 aaPredicted RBP17.24■□□□□ 0.35
UPF1-204ENST00000596842 SARSP49591 514 aaKnown RBP17.24■□□□□ 0.35
UPF1-204ENST00000596842 CTAGE6Q86UF2 777 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 CTAGE4Q8IX94 777 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 STAG1Q8WVM7 1258 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 SHISA4Q96DD7 197 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 AK7Q96M32 723 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 FUT8Q9BYC5 575 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 HDAC6Q9UBN7 1215 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 ADAM21Q9UKJ8 722 aa17.24■□□□□ 0.35
UPF1-204ENST00000596842 ZSCAN26Q16670 478 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 TICAM2Q86XR7 235 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 NELFBQ8WX92 580 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 ZSCAN10Q96SZ4 725 aaPredicted RBP17.23■□□□□ 0.35
UPF1-204ENST00000596842 ADD3Q9UEY8 706 aaKnown RBP17.23■□□□□ 0.35
UPF1-204ENST00000596842 CDC23Q9UJX2 597 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 MST1RQ04912 1400 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 ABCC12Q96J65 1359 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 STK36Q9NRP7 1315 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 SRGAP2O75044 1071 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 CAPN2P17655 700 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 ERCC5P28715 1186 aaPredicted RBP17.23■□□□□ 0.35
UPF1-204ENST00000596842 AATFQ9NY61 560 aaKnown RBP eCLIP17.23■□□□□ 0.35
UPF1-204ENST00000596842 PP2D1A8MPX8 630 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 CNGA4Q8IV77 575 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 CAGE1Q8TC20 777 aa17.23■□□□□ 0.35
UPF1-204ENST00000596842 MYO5AQ9Y4I1 1855 aaKnown RBP17.22■□□□□ 0.35
UPF1-204ENST00000596842 FAM237AA0A1B0GTK4 181 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 MRPS25P82663 173 aaKnown RBP17.22■□□□□ 0.35
UPF1-204ENST00000596842 TRIML1Q8N9V2 468 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 TSPYL1Q9H0U9 437 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 IQUBQ8NA54 791 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 TSPY2A6NKD2 308 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 GNAT2P19087 354 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 RSRC2Q7L4I2 434 aaKnown RBP17.22■□□□□ 0.35
UPF1-204ENST00000596842 CTAGE1Q96RT6 745 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 NAPGQ99747 312 aaPredicted RBP17.22■□□□□ 0.35
UPF1-204ENST00000596842 RABEP2Q9H5N1 569 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 FAN1Q9Y2M0 1017 aa17.22■□□□□ 0.35
UPF1-204ENST00000596842 ERLIN1O75477 346 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 STAT6P42226 847 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 EIF5P55010 431 aaKnown RBP17.21■□□□□ 0.35
UPF1-204ENST00000596842 VSNL1P62760 191 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 ALX1Q15699 326 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 CEP112Q8N8E3 955 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 NOA1Q8NC60 698 aaKnown RBP17.21■□□□□ 0.35
UPF1-204ENST00000596842 TFCP2L1Q9NZI6 479 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 KCNJ18B7U540 433 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 ADAMTS3O15072 1205 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 ATP6V1AP38606 617 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 PAK1Q13153 545 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 KCNJ12Q14500 433 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 CCDC152Q4G0S7 254 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 KIAA1328Q86T90 577 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 TEX2Q8IWB9 1127 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 TXLNBQ8N3L3 684 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 CYP2D6P10635 497 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 ERVK-24P63145 666 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 TRIM47Q96LD4 638 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 PANX2Q96RD6 677 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 PSMB7Q99436 277 aa17.21■□□□□ 0.35
UPF1-204ENST00000596842 RNF26Q9BY78 433 aaPredicted RBP17.21■□□□□ 0.35
UPF1-204ENST00000596842 CWC15Q9P013 229 aaKnown RBP17.21■□□□□ 0.35
UPF1-204ENST00000596842 CDHR2Q9BYE9 1310 aa17.21■□□□□ 0.34
UPF1-204ENST00000596842 PPP1R3GB7ZBB8 358 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 MYO1BO43795 1136 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 RAD51AP2Q09MP3 1159 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 PKN1Q16512 942 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 MATR3P43243 847 aaKnown RBP eCLIP17.2■□□□□ 0.34
UPF1-204ENST00000596842 DNA2P51530 1060 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 COPB1P53618 953 aaKnown RBP17.2■□□□□ 0.34
UPF1-204ENST00000596842 LEKR1Q6ZMV7 388 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 FGFR2P21802 821 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 NKX1-1Q15270 411 aaPredicted RBP17.2■□□□□ 0.34
UPF1-204ENST00000596842 ANKZF1Q9H8Y5 726 aa17.2■□□□□ 0.34
UPF1-204ENST00000596842 CAMTA1Q9Y6Y1 1673 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms