RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 SLC12A7Q9Y666 1083 aa12.7□□□□□ -0.38
USE1-204ENST00000594399 SPDYE5A6NIY4 337 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 DDAH1O94760 285 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 EVCP57679 992 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 APOA5Q6Q788 366 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 SYNE3Q6ZMZ3 975 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 CATIPQ7Z7H3 387 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 ERO1BQ86YB8 467 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 SIAH1Q8IUQ4 282 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 HSCBQ8IWL3 235 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 ZNF654Q8IZM8 581 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 MKL1Q969V6 931 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 WDR18Q9BV38 432 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.69□□□□□ -0.38
USE1-204ENST00000594399 BRPF3Q9ULD4 1205 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 TPCN1Q9ULQ1 816 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 NAP1L2Q9ULW6 460 aaPredicted RBP12.69□□□□□ -0.38
USE1-204ENST00000594399 LIMCH1Q9UPQ0 1083 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 TMX2Q9Y320 296 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 ZHX2Q9Y6X8 837 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 NID2Q14112 1375 aa12.69□□□□□ -0.38
USE1-204ENST00000594399 A0A1W2PRG0 241 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 CALM1P0DP23 149 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 CALM2P0DP24 149 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 CALM3P0DP25 149 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 RCAN1P53805 252 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 HUNKP57058 714 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 MAP2K1Q02750 393 aaPredicted RBP12.68□□□□□ -0.38
USE1-204ENST00000594399 PPATQ06203 517 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 PPIL2Q13356 520 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 MICU3Q86XE3 530 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 ZNF280CQ8ND82 737 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 GMCL1P1Q8NEA9 526 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 ACER1Q8TDN7 264 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 CAPNS2Q96L46 248 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 LARP6Q9BRS8 491 aaKnown RBP12.68□□□□□ -0.38
USE1-204ENST00000594399 KIAA1683Q9H0B3 1180 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 GOPCQ9HD26 462 aa12.68□□□□□ -0.38
USE1-204ENST00000594399 RBM19Q9Y4C8 960 aaKnown RBP12.68□□□□□ -0.38
USE1-204ENST00000594399 LOC285556D6RIA3 1793 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 GOLGA8AA7E2F4 631 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 USP17L10C9JJH3 530 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 ZBTB43O43298 467 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 USP14P54578 494 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 TROAPQ12815 778 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 GRM1Q13255 1194 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 MTMR2Q13614 643 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 CYP4F22Q6NT55 531 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 OPTNQ96CV9 577 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 SLC10A4Q96EP9 437 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 OTUD5Q96G74 571 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 ZNF274Q96GC6 653 aaPredicted RBP12.67□□□□□ -0.38
USE1-204ENST00000594399 ZSCAN31Q96LW9 406 aaPredicted RBP12.67□□□□□ -0.38
USE1-204ENST00000594399 MYL10Q9BUA6 226 aa12.67□□□□□ -0.38
USE1-204ENST00000594399 SH2B1Q9NRF2 756 aaPredicted RBP12.67□□□□□ -0.38
USE1-204ENST00000594399 TRIM75PA6NK02 468 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 K7ELQ4 463 aaPredicted RBP12.66□□□□□ -0.38
USE1-204ENST00000594399 RAD21O60216 631 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 LARGE1O95461 756 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 RXRAP19793 462 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 PDIA3P30101 505 aaKnown RBP12.66□□□□□ -0.38
USE1-204ENST00000594399 MAP2K2P36507 400 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 METAP2P50579 478 aaKnown RBP eCLIP12.66□□□□□ -0.38
USE1-204ENST00000594399 BACE1P56817 501 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 SPP2Q13103 211 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 STK3Q13188 491 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 BECN1Q14457 450 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 ZYXQ15942 572 aaKnown RBP12.66□□□□□ -0.38
USE1-204ENST00000594399 ME3Q16798 604 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 SLFN13Q68D06 897 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 RAB11FIP4Q86YS3 637 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 CTCFLQ8NI51 663 aaPredicted RBP12.66□□□□□ -0.38
USE1-204ENST00000594399 NUP133Q8WUM0 1156 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 CNKSR2Q8WXI2 1034 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 GMCL1Q96IK5 515 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 MAP3K14Q99558 947 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 BEGAINQ9BUH8 593 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 SLKQ9H2G2 1235 aaPredicted RBP12.66□□□□□ -0.38
USE1-204ENST00000594399 VCPKMTQ9H867 229 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 WBP1LQ9NX94 342 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 MTMR7Q9Y216 660 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 AFG3L2Q9Y4W6 797 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 PTPRFP10586 1907 aa12.66□□□□□ -0.38
USE1-204ENST00000594399 C19orf81C9J6K1 198 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 F5H6K3 240 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 PFKFB2O60825 505 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 NDUFB10O96000 172 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 SNHG28P0DPA3 235 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 PDHBP11177 359 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 KIF5BP33176 963 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 KLRC3Q07444 240 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 GRM4Q14833 912 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 RTN1Q16799 776 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 CCDC96Q2M329 555 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 USP17L2Q6R6M4 530 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 RASGRP2Q7LDG7 609 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 CCDC144CPQ8IYA2 1237 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 DCAF4Q8WV16 495 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 LPAR1Q92633 364 aa12.65□□□□□ -0.38
USE1-204ENST00000594399 GTF3C6Q969F1 213 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms