RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CCT4P50991 539 aaKnown RBP12.65□□□□□ -0.38
SS18-221ENST00000582448 UBAP2LQ14157 1087 aaKnown RBP12.65□□□□□ -0.38
SS18-221ENST00000582448 PODNQ7Z5L7 613 aa12.65□□□□□ -0.38
SS18-221ENST00000582448 OGFOD1Q8N543 542 aa12.65□□□□□ -0.38
SS18-221ENST00000582448 NIFKQ9BYG3 293 aaKnown RBP12.65□□□□□ -0.38
SS18-221ENST00000582448 PPP1R12CQ9BZL4 782 aa12.65□□□□□ -0.38
SS18-221ENST00000582448 CWC25Q9NXE8 425 aaPredicted RBP12.65□□□□□ -0.38
SS18-221ENST00000582448 LRRC37AA6NMS7 1700 aa12.65□□□□□ -0.38
SS18-221ENST00000582448 PITPNM2Q9BZ72 1349 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 BACH1O14867 736 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 PCCAP05165 728 aaPredicted RBP12.64□□□□□ -0.39
SS18-221ENST00000582448 TM4SF4P48230 202 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 EPHA4P54764 986 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 FKBP5Q13451 457 aaPredicted RBP12.64□□□□□ -0.39
SS18-221ENST00000582448 CCDC102BQ68D86 513 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 INTS3Q68E01 1043 aaKnown RBP12.64□□□□□ -0.39
SS18-221ENST00000582448 FBXO46Q6PJ61 603 aaPredicted RBP12.64□□□□□ -0.39
SS18-221ENST00000582448 ARMC9Q7Z3E5 817 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 CCDC191Q8NCU4 936 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 R3HDMLQ9H3Y0 253 aa12.64□□□□□ -0.39
SS18-221ENST00000582448 DNAAF2Q9NVR5 837 aaKnown RBP12.64□□□□□ -0.39
SS18-221ENST00000582448 TNRC18O15417 2968 aaPredicted RBP12.63□□□□□ -0.39
SS18-221ENST00000582448 SCN9AQ15858 1988 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 WNT10BO00744 389 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 FKTNO75072 461 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 SASH1O94885 1247 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 DKK1O94907 266 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 ATP1A2P50993 1020 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 PTPN12Q05209 780 aaKnown RBP12.63□□□□□ -0.39
SS18-221ENST00000582448 ZNF385CQ66K41 422 aaPredicted RBP12.63□□□□□ -0.39
SS18-221ENST00000582448 CDC5LQ99459 802 aaKnown RBP12.63□□□□□ -0.39
SS18-221ENST00000582448 ZBTB40Q9NUA8 1239 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 SCHIP1Q9P0W5 487 aaPredicted RBP12.63□□□□□ -0.39
SS18-221ENST00000582448 FZD1Q9UP38 647 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 PDE4DIPQ5VU43 2346 aa12.63□□□□□ -0.39
SS18-221ENST00000582448 ATP4AP20648 1035 aa12.62□□□□□ -0.39
SS18-221ENST00000582448 SREBF2Q12772 1141 aa12.62□□□□□ -0.39
SS18-221ENST00000582448 FOXR1Q6PIV2 292 aa12.62□□□□□ -0.39
SS18-221ENST00000582448 ANGEL1Q9UNK9 670 aaKnown RBP12.62□□□□□ -0.39
SS18-221ENST00000582448 MINPP1Q9UNW1 487 aa12.62□□□□□ -0.39
SS18-221ENST00000582448 DDX58O95786 925 aaKnown RBP12.61□□□□□ -0.39
SS18-221ENST00000582448 FOXK2Q01167 660 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 HDAC1Q13547 482 aaPredicted RBP12.61□□□□□ -0.39
SS18-221ENST00000582448 TBCELQ5QJ74 424 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 DACT2Q5SW24 774 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 TTLL5Q6EMB2 1281 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 SLC4A10Q6U841 1118 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 KIAA0825Q8IV33 1275 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 METTL22Q9BUU2 404 aaPredicted RBP12.61□□□□□ -0.39
SS18-221ENST00000582448 TRIM17Q9Y577 477 aa12.61□□□□□ -0.39
SS18-221ENST00000582448 FAM181BA6NEQ2 426 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 CTSWP56202 376 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 SRSF11Q05519 484 aaKnown RBP12.6□□□□□ -0.39
SS18-221ENST00000582448 STRIP1Q5VSL9 837 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 TXNRD3Q86VQ6 643 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 ZDHHC1Q8WTX9 485 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 ZNF594Q96JF6 807 aaPredicted RBP12.6□□□□□ -0.39
SS18-221ENST00000582448 COA1Q9GZY4 146 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 GREM2Q9H772 168 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 BSDC1Q9NW68 430 aaPredicted RBP12.6□□□□□ -0.39
SS18-221ENST00000582448 MAP3K2Q9Y2U5 619 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 PAPPA2Q9BXP8 1791 aa12.6□□□□□ -0.39
SS18-221ENST00000582448 IGHDP01880 384 aa12.59□□□□□ -0.39
SS18-221ENST00000582448 SLC9A9Q8IVB4 645 aa12.59□□□□□ -0.39
SS18-221ENST00000582448 PGBD3Q8N328 593 aa12.59□□□□□ -0.39
SS18-221ENST00000582448 TTLL11Q8NHH1 800 aa12.59□□□□□ -0.39
SS18-221ENST00000582448 TRERF1Q96PN7 1200 aa12.59□□□□□ -0.39
SS18-221ENST00000582448 CRISPLD1Q9H336 500 aa12.59□□□□□ -0.39
SS18-221ENST00000582448 SFI1A8K8P3 1242 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 GNAI3P08754 354 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 IGHMBP2P38935 993 aaKnown RBP12.58□□□□□ -0.4
SS18-221ENST00000582448 LYPD4Q6UWN0 246 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 G2E3Q7L622 706 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 APOBEC3FQ8IUX4 373 aaKnown RBP12.58□□□□□ -0.4
SS18-221ENST00000582448 SIX5Q8N196 739 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 GCC1Q96CN9 775 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 HDAC5Q9UQL6 1122 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 LEMD3Q9Y2U8 911 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 MYO3BQ8WXR4 1341 aa12.58□□□□□ -0.4
SS18-221ENST00000582448 MED23Q9ULK4 1368 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 PI4KAP2A4QPH2 592 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 F8W031 263 aaPredicted RBP12.57□□□□□ -0.4
SS18-221ENST00000582448 HMMRO75330 724 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 RASA1P20936 1047 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 KLRK1P26718 216 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 KCNJ4P48050 445 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 NEXNQ0ZGT2 675 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 LBRQ14739 615 aaKnown RBP12.57□□□□□ -0.4
SS18-221ENST00000582448 CWF19L2Q2TBE0 894 aaKnown RBP12.57□□□□□ -0.4
SS18-221ENST00000582448 NOM1Q5C9Z4 860 aaKnown RBP12.57□□□□□ -0.4
SS18-221ENST00000582448 PI4KAP1Q8N8J0 262 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 MPHOSPH8Q99549 860 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 DEFB129Q9H1M3 183 aa12.57□□□□□ -0.4
SS18-221ENST00000582448 ZNF609O15014 1411 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 MANSC4A6NHS7 340 aaPredicted RBP12.56□□□□□ -0.4
SS18-221ENST00000582448 IGKV5-2P06315 115 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 TXLNAP40222 546 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 DLGAP5Q15398 846 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 LDLRAD1Q5T700 205 aa12.56□□□□□ -0.4
SS18-221ENST00000582448 KSR2Q6VAB6 950 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms