RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	IL17A	Q16552	155 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	CCDC93	Q567U6	631 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	MAPKAPK5	Q8IW41	473 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	KDM4F	A0A1W2PPD8	638 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	TFAP4	Q01664	338 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	CTR9	Q6PD62	1173 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	MTR	Q99707	1265 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	TRIM34	Q9BYJ4	488 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	UBA5	Q9GZZ9	404 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	CNNM2	Q9H8M5	875 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	SMARCAL1	Q9NZC9	954 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	COL5A2	P05997	1499 aa	Predicted RBP	16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	FAM205A	Q6ZU69	1335 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	KRT9	P35527	623 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	MECOM	Q03112	1051 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	NKX1-1	Q15270	411 aa	Predicted RBP	16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	ZNF34	Q8IZ26	560 aa		16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	SRPRB	Q9Y5M8	271 aa	Known RBP	16.78	■□□□□ 0.28
PRPF8-216	ENST00000577001	KIF1A	Q12756	1690 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	MROH5	Q6ZUA9	1318 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	USP5	P45974	858 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	FAM98C	Q17RN3	349 aa	Known RBP	16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	CCDC178	Q5BJE1	867 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	TYW1B	Q6NUM6	668 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	SMCR8	Q8TEV9	937 aa	Predicted RBP	16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	NELFB	Q8WX92	580 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	WASF1	Q92558	559 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	CCDC102A	Q96A19	550 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	L2HGDH	Q9H9P8	463 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	DUSP10	Q9Y6W6	482 aa		16.77	■□□□□ 0.28
PRPF8-216	ENST00000577001	MACROD2	A1Z1Q3	448 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	IL6ST	P40189	918 aa	Predicted RBP	16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	RNASE9	P60153	205 aa	Known RBP	16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	KRT31	Q15323	416 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	CAVIN4	Q5BKX8	364 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	PNKP	Q96T60	521 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	TMEM60	Q9H2L4	133 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	ARGLU1	Q9NWB6	273 aa	Predicted RBP	16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	ANKIB1	Q9P2G1	1089 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	PCNT	O95613	3336 aa		16.77	■□□□□ 0.27
PRPF8-216	ENST00000577001	N4BP2	Q86UW6	1770 aa	Predicted RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	FAM84B	Q96KN1	310 aa	Predicted RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	MKNK2	Q9HBH9	465 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	CCDC175	P0C221	793 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	H2AFX	P16104	143 aa	Predicted RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	XBP1	P17861	261 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	PLCD1	P51178	756 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	STAG1	Q8WVM7	1258 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	BPIFA3	Q9BQP9	254 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	PDE11A	Q9HCR9	933 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	VPS18	Q9P253	973 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	XDH	P47989	1333 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	GYPC	P04921	128 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	TNNT3	P45378	269 aa	Predicted RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	HNRNPH2	P55795	449 aa	Known RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	LETM2	Q2VYF4	491 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	NOA1	Q8NC60	698 aa	Known RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	TGFBRAP1	Q8WUH2	860 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	RIN2	Q8WYP3	895 aa	Predicted RBP	16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	TIGD1	Q96MW7	591 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	PLA2G12B	Q9BX93	195 aa		16.76	■□□□□ 0.27
PRPF8-216	ENST00000577001	CCDC196	A0A1B0GTZ2	297 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	SSB	P05455	408 aa	Known RBP eCLIP	16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	DYM	Q7RTS9	669 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	MLKL	Q8NB16	471 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	STAT6	P42226	847 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	PRCP	P42785	496 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	ERVK-24	P63145	666 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	SMC1A	Q14683	1233 aa	Known RBP	16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	NR1I3	Q14994	352 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	JAKMIP3	Q5VZ66	844 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	TBC1D9B	Q66K14	1250 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	DNAAF5	Q86Y56	855 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	TBC1D7	Q9P0N9	293 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	MINPP1	Q9UNW1	487 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	KCP	Q6ZWJ8	1503 aa		16.75	■□□□□ 0.27
PRPF8-216	ENST00000577001	ZNF185	O15231	689 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	KIF5C	O60282	957 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	CHMP4BP1	P59074	171 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	DZIP1	Q86YF9	867 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	MARCH10	Q8NA82	808 aa	Predicted RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	SRRT	Q9BXP5	876 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	FOXP1	Q9H334	677 aa	Predicted RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	ADGRG1	Q9Y653	693 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	ABCC12	Q96J65	1359 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	PPP1R3G	B7ZBB8	358 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001		H3BQF6	201 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	CXCR5	P32302	372 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	EIF5	P55010	431 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	SEC23A	Q15436	765 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	FILIP1L	Q4L180	1135 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	DNAJC21	Q5F1R6	531 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	UTP14C	Q5TAP6	766 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	AMIGO3	Q86WK7	504 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	PHRF1	Q9P1Y6	1649 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	KIF2A	O00139	706 aa	Predicted RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	CAMTA2	O94983	1202 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	TBC1D8	O95759	1140 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	ZNF18	P17022	549 aa		16.74	■□□□□ 0.27

Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms