RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OTOP2Q7RTS6 562 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 KAZALD1Q96I82 304 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 PPP1R12CQ9BZL4 782 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 SLC4A7Q9Y6M7 1214 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 MYO15AQ9UKN7 3530 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 ROBO3Q96MS0 1386 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 RIF1Q5UIP0 2472 aaKnown RBP20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L15C9J2P7 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L13C9JLJ4 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L11C9JVI0 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L18D6R9N7 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L22D6RA61 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L17D6RBQ6 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L19D6RCP7 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L20D6RJB6 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 ADAMTS4O75173 837 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L24Q0WX57 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 LEXMQ3ZCV2 418 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 USP17L2Q6R6M4 530 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 C12orf42Q96LP6 360 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 GINM1Q9NU53 330 aa20.31■□□□□ 0.84
VPS53-218ENST00000575207 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.3■□□□□ 0.84
VPS53-218ENST00000575207 MOXD2PA6NHM9 499 aa20.3■□□□□ 0.84
VPS53-218ENST00000575207 SLF2Q8IX21 1173 aa20.3■□□□□ 0.84
VPS53-218ENST00000575207 CERS4Q9HA82 394 aa20.3■□□□□ 0.84
VPS53-218ENST00000575207 SLC5A4Q9NY91 659 aa20.3■□□□□ 0.84
VPS53-218ENST00000575207 ELP1O95163 1332 aa20.29■□□□□ 0.84
VPS53-218ENST00000575207 CA3P07451 260 aa20.29■□□□□ 0.84
VPS53-218ENST00000575207 TMEM67Q5HYA8 995 aa20.29■□□□□ 0.84
VPS53-218ENST00000575207 SAMD1Q6SPF0 538 aaPredicted RBP20.29■□□□□ 0.84
VPS53-218ENST00000575207 CATSPERGQ6ZRH7 1159 aa20.29■□□□□ 0.84
VPS53-218ENST00000575207 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.29■□□□□ 0.84
VPS53-218ENST00000575207 LPIN2Q92539 896 aa20.29■□□□□ 0.84
VPS53-218ENST00000575207 PRRX2Q99811 253 aa20.29■□□□□ 0.84
VPS53-218ENST00000575207 GPR75-ASB3A0A0A6YYF3 556 aa20.28■□□□□ 0.84
VPS53-218ENST00000575207 CYP2C18P33260 490 aa20.28■□□□□ 0.84
VPS53-218ENST00000575207 CCSAPQ6IQ19 270 aaPredicted RBP20.28■□□□□ 0.84
VPS53-218ENST00000575207 ZGPATQ8N5A5 531 aaKnown RBP20.28■□□□□ 0.84
VPS53-218ENST00000575207 MAML3Q96JK9 1138 aa20.28■□□□□ 0.84
VPS53-218ENST00000575207 UBE2ZQ9H832 354 aaPredicted RBP20.28■□□□□ 0.84
VPS53-218ENST00000575207 ZBTB22O15209 634 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 LPXNO60711 386 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 MAP4K4O95819 1239 aaPredicted RBP20.27■□□□□ 0.84
VPS53-218ENST00000575207 IL9P15248 144 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 ATP2A2P16615 1042 aaKnown RBP20.27■□□□□ 0.84
VPS53-218ENST00000575207 GRB10Q13322 594 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 DZIP1Q86YF9 867 aaKnown RBP20.27■□□□□ 0.84
VPS53-218ENST00000575207 FAM126BQ8IXS8 530 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 KLHDC9Q8NEP7 349 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 SUCLG2Q96I99 432 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 C9orf78Q9NZ63 289 aaPredicted RBP20.27■□□□□ 0.84
VPS53-218ENST00000575207 DENND2AQ9ULE3 1009 aa20.27■□□□□ 0.84
VPS53-218ENST00000575207 KMT2BQ9UMN6 2715 aaPredicted RBP20.26■□□□□ 0.83
VPS53-218ENST00000575207 SEMA3EO15041 775 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 TCF15Q12870 199 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 RABL6Q3YEC7 729 aaPredicted RBP20.26■□□□□ 0.83
VPS53-218ENST00000575207 ARNTL2Q8WYA1 636 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 MOV10L1Q9BXT6 1211 aaKnown RBP20.26■□□□□ 0.83
VPS53-218ENST00000575207 GNL3LQ9NVN8 582 aaKnown RBP20.26■□□□□ 0.83
VPS53-218ENST00000575207 LMCD1Q9NZU5 365 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 PI4KBQ9UBF8 816 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 MROH7-TTC4A0A0A0MT08 1334 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 FAM186AA6NE01 2351 aa20.26■□□□□ 0.83
VPS53-218ENST00000575207 ZFHX4Q86UP3 3567 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 SPDYE16A6NNV3 312 aaPredicted RBP20.25■□□□□ 0.83
VPS53-218ENST00000575207 F6X3S4 739 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 KRT37O76014 449 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 SHROOM1Q2M3G4 852 aaPredicted RBP20.25■□□□□ 0.83
VPS53-218ENST00000575207 TWISTNBQ3B726 338 aaPredicted RBP20.25■□□□□ 0.83
VPS53-218ENST00000575207 IER5LQ5T953 404 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 ABRAQ8N0Z2 381 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 SHCBP1Q8NEM2 672 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 GLT1D1Q96MS3 346 aa20.25■□□□□ 0.83
VPS53-218ENST00000575207 GRXCR2A6NFK2 248 aa20.24■□□□□ 0.83
VPS53-218ENST00000575207 ARVCFO00192 962 aa20.24■□□□□ 0.83
VPS53-218ENST00000575207 AKR1A1P14550 325 aa20.24■□□□□ 0.83
VPS53-218ENST00000575207 TAP1Q03518 808 aa20.24■□□□□ 0.83
VPS53-218ENST00000575207 KCNA10Q16322 511 aa20.24■□□□□ 0.83
VPS53-218ENST00000575207 ZBTB21Q9ULJ3 1066 aa20.24■□□□□ 0.83
VPS53-218ENST00000575207 BAHCC1Q9P281 2608 aa20.23■□□□□ 0.83
VPS53-218ENST00000575207 TLR3O15455 904 aaKnown RBP20.23■□□□□ 0.83
VPS53-218ENST00000575207 TECTAO75443 2155 aa20.23■□□□□ 0.83
VPS53-218ENST00000575207 CD4P01730 458 aa20.23■□□□□ 0.83
VPS53-218ENST00000575207 PTCRAQ6ISU1 281 aaPredicted RBP20.23■□□□□ 0.83
VPS53-218ENST00000575207 METTL16Q86W50 562 aaKnown RBP20.23■□□□□ 0.83
VPS53-218ENST00000575207 DNAJC18Q9H819 358 aa20.23■□□□□ 0.83
VPS53-218ENST00000575207 CHD8Q9HCK8 2581 aa20.23■□□□□ 0.83
VPS53-218ENST00000575207 ZNF865P0CJ78 1059 aaPredicted RBP20.22■□□□□ 0.83
VPS53-218ENST00000575207 ERCC3P19447 782 aa20.22■□□□□ 0.83
VPS53-218ENST00000575207 LENG1Q96BZ8 264 aaPredicted RBP20.22■□□□□ 0.83
VPS53-218ENST00000575207 SYNRGQ9UMZ2 1314 aa20.22■□□□□ 0.83
VPS53-218ENST00000575207 DMDP11532 3685 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 RGS20O76081 388 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 ARHGEF15O94989 841 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 PUS10Q3MIT2 529 aaKnown RBP20.21■□□□□ 0.83
VPS53-218ENST00000575207 BMP8AQ7Z5Y6 402 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 RPUSD2Q8IZ73 545 aaKnown RBP20.21■□□□□ 0.83
VPS53-218ENST00000575207 KLHDC4Q8TBB5 520 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 VWCEQ96DN2 955 aa20.21■□□□□ 0.83
VPS53-218ENST00000575207 ADAMTS8Q9UP79 889 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms