RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 BLOC1S2Q6QNY1 142 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 FBXL16Q8N461 479 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 DNAJC5GQ8N7S2 189 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 ZKSCAN3Q9BRR0 538 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 VCPKMTQ9H867 229 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 STX8Q9UNK0 236 aa21.38■■□□□ 1.01
CCDC40-213ENST00000574933 TM4SF4P48230 202 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 HMGCS2P54868 508 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 MKRN3Q13064 507 aaKnown RBP21.37■■□□□ 1.01
CCDC40-213ENST00000574933 FASTKD5Q7L8L6 764 aaKnown RBP21.37■■□□□ 1.01
CCDC40-213ENST00000574933 GMCL1P1Q8NEA9 526 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 BRI3BPQ8WY22 251 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 LPAR1Q92633 364 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 TBC1D32Q96NH3 1257 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 ZIC5Q96T25 663 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 FEZ1Q99689 392 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 TMEM47Q9BQJ4 181 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 EMILIN3Q9NT22 766 aa21.37■■□□□ 1.01
CCDC40-213ENST00000574933 IFIT3O14879 490 aaKnown RBP21.36■■□□□ 1.01
CCDC40-213ENST00000574933 AOC2O75106 756 aa21.36■■□□□ 1.01
CCDC40-213ENST00000574933 CASTP20810 708 aaKnown RBP21.36■■□□□ 1.01
CCDC40-213ENST00000574933 RPS6KB1P23443 525 aa21.36■■□□□ 1.01
CCDC40-213ENST00000574933 LIFRP42702 1097 aa21.36■■□□□ 1.01
CCDC40-213ENST00000574933 KIF23Q02241 960 aaPredicted RBP21.36■■□□□ 1.01
CCDC40-213ENST00000574933 RUFY3Q7L099 469 aa21.36■■□□□ 1.01
CCDC40-213ENST00000574933 CHST3Q7LGC8 479 aa21.36■■□□□ 1.01
CCDC40-213ENST00000574933 AGXT2Q9BYV1 514 aa21.36■■□□□ 1.01
CCDC40-213ENST00000574933 CCL15-CCL14A0A0B4J2E2 113 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 ERICH2A1L162 156 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 SH2B2O14492 632 aaPredicted RBP21.35■■□□□ 1.01
CCDC40-213ENST00000574933 ATP2B2Q01814 1243 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 SREBF2Q12772 1141 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 CCL15Q16663 113 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 TMTC2Q8N394 836 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 KIF2CQ99661 725 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 LY9Q9HBG7 655 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 GOPCQ9HD26 462 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 ZCCHC17Q9NP64 241 aaKnown RBP21.35■■□□□ 1.01
CCDC40-213ENST00000574933 TMOD4Q9NZQ9 345 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 SLC45A1Q9Y2W3 748 aa21.35■■□□□ 1.01
CCDC40-213ENST00000574933 F5H6K3 240 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 KLRC3Q07444 240 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 WTAPQ15007 396 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 TMEM67Q5HYA8 995 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 KIAA1755Q5JYT7 1200 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 IFIT1BQ5T764 474 aaKnown RBP21.34■■□□□ 1.01
CCDC40-213ENST00000574933 GPAT2Q6NUI2 795 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 ANKRD23Q86SG2 305 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 SGMS1Q86VZ5 419 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 PTPN18Q99952 460 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 AGTPBP1Q9UPW5 1226 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 CYP46A1Q9Y6A2 500 aa21.34■■□□□ 1.01
CCDC40-213ENST00000574933 NDUFB10O96000 172 aa21.33■■□□□ 1.01
CCDC40-213ENST00000574933 CPA1P15085 419 aa21.33■■□□□ 1.01
CCDC40-213ENST00000574933 HOXA7P31268 230 aaPredicted RBP21.33■■□□□ 1.01
CCDC40-213ENST00000574933 GRM1Q13255 1194 aa21.33■■□□□ 1.01
CCDC40-213ENST00000574933 LRRC47Q8N1G4 583 aaKnown RBP21.33■■□□□ 1.01
CCDC40-213ENST00000574933 IL27Q8NEV9 243 aa21.33■■□□□ 1.01
CCDC40-213ENST00000574933 ALDH8A1Q9H2A2 487 aaPredicted RBP21.33■■□□□ 1.01
CCDC40-213ENST00000574933 BAZ2BQ9UIF8 2168 aaKnown RBP21.32■■□□□ 1
CCDC40-213ENST00000574933 BTBD19C9JJ37 291 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 WDR46O15213 610 aaKnown RBP21.32■■□□□ 1
CCDC40-213ENST00000574933 SNHG28P0DPA3 235 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 VCAM1P19320 739 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 DGKZQ13574 1117 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 ZYXQ15942 572 aaKnown RBP21.32■■□□□ 1
CCDC40-213ENST00000574933 IFNL1Q8IU54 200 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 PNMA1Q8ND90 353 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 GMCL1Q96IK5 515 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 KAT14Q9H8E8 782 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 SENP2Q9HC62 589 aa21.32■■□□□ 1
CCDC40-213ENST00000574933 GPHNQ9NQX3 736 aaPredicted RBP21.32■■□□□ 1
CCDC40-213ENST00000574933 COL11A1P12107 1806 aaPredicted RBP21.32■■□□□ 1
CCDC40-213ENST00000574933 MYH6P13533 1939 aa21.31■■□□□ 1
CCDC40-213ENST00000574933 IGF2BP3O00425 579 aaKnown RBP eCLIP21.31■■□□□ 1
CCDC40-213ENST00000574933 SLFN13Q68D06 897 aa21.31■■□□□ 1
CCDC40-213ENST00000574933 GADL1Q6ZQY3 521 aa21.31■■□□□ 1
CCDC40-213ENST00000574933 TCEANC2Q96MN5 208 aa21.31■■□□□ 1
CCDC40-213ENST00000574933 LRRC2Q9BYS8 371 aa21.31■■□□□ 1
CCDC40-213ENST00000574933 UPF3BQ9BZI7 483 aaKnown RBP21.31■■□□□ 1
CCDC40-213ENST00000574933 EVCP57679 992 aa21.3■■□□□ 1
CCDC40-213ENST00000574933 PABPC4Q13310 644 aaKnown RBP eCLIP21.3■■□□□ 1
CCDC40-213ENST00000574933 TREML2Q5T2D2 321 aa21.3■■□□□ 1
CCDC40-213ENST00000574933 OTUD7BQ6GQQ9 843 aa21.3■■□□□ 1
CCDC40-213ENST00000574933 Q6ZUG5 572 aa21.3■■□□□ 1
CCDC40-213ENST00000574933 FAM43AQ8N2R8 423 aa21.3■■□□□ 1
CCDC40-213ENST00000574933 DCAF4Q8WV16 495 aa21.3■■□□□ 1
CCDC40-213ENST00000574933 A0A0G2JMZ2 1700 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L15C9J2P7 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L13C9JLJ4 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L11C9JVI0 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L18D6R9N7 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L22D6RA61 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L17D6RBQ6 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L19D6RCP7 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L20D6RJB6 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 PDHBP11177 359 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 USP17L24Q0WX57 530 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 TROAPQ12815 778 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 CATSPERGQ6ZRH7 1159 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms