RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 CGNQ9P2M7 1197 aaKnown RBP5.17□□□□□ -1.58
VPS39-212ENST00000570023 ADAMTS1Q9UHI8 967 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 GTF2IRD1Q9UHL9 959 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 U3KQE9 123 aa5.17□□□□□ -1.58
VPS39-212ENST00000570023 SCAMP3O14828 347 aaKnown RBP5.16□□□□□ -1.58
VPS39-212ENST00000570023 ANP32CO43423 234 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 RECKO95980 971 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 NEFHP12036 1026 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 MCM5P33992 734 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 KCNJ4P48050 445 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 CCDC96Q2M329 555 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 PRAMEF13Q5VWM6 474 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 C22orf34Q6ZV56 151 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 REC114Q7Z4M0 266 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 VSIG10LQ86VR7 867 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 ZSCAN30Q86W11 494 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 FAM181AQ8N9Y4 354 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 ITFG2Q969R8 447 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 MISP3Q96FF7 219 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 PAIP2Q9BPZ3 127 aaKnown RBP5.16□□□□□ -1.58
VPS39-212ENST00000570023 TNKS2Q9H2K2 1166 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 FEZ2Q9UHY8 353 aaPredicted RBP5.16□□□□□ -1.58
VPS39-212ENST00000570023 PLAGL2Q9UPG8 496 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 MAPK8IP1Q9UQF2 711 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 POLR3KQ9Y2Y1 108 aaPredicted RBP5.16□□□□□ -1.58
VPS39-212ENST00000570023 CORINQ9Y5Q5 1042 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 MRVI1Q9Y6F6 885 aa5.16□□□□□ -1.58
VPS39-212ENST00000570023 ATE1O95260 518 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 ZNF853P0CG23 659 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 GP2P55259 537 aaKnown RBP5.15□□□□□ -1.59
VPS39-212ENST00000570023 MTA1Q13330 715 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 IFI16Q16666 785 aaKnown RBP5.15□□□□□ -1.59
VPS39-212ENST00000570023 LETMD1Q6P1Q0 360 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 RINLQ6ZS11 566 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 ANKRD23Q86SG2 305 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 RPAINQ86UA6 219 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 STK11IPQ8N1F8 1099 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 PLD6Q8N2A8 252 aaKnown RBP5.15□□□□□ -1.59
VPS39-212ENST00000570023 FBXO27Q8NI29 283 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 RIN3Q8TB24 985 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 BCL7CQ8WUZ0 217 aaPredicted RBP5.15□□□□□ -1.59
VPS39-212ENST00000570023 FBXL18Q96ME1 805 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 FEZ1Q99689 392 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 NT5C1AQ9BXI3 368 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 PRDM5Q9NQX1 630 aaPredicted RBP5.15□□□□□ -1.59
VPS39-212ENST00000570023 DONSONQ9NYP3 566 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 KIAA1522Q9P206 1035 aaPredicted RBP5.15□□□□□ -1.59
VPS39-212ENST00000570023 VAV3Q9UKW4 847 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 KNSTRNQ9Y448 316 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 SNX11Q9Y5W9 270 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 KIF16BQ96L93 1317 aa5.15□□□□□ -1.59
VPS39-212ENST00000570023 TMEM265A0A087WTH1 108 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 LOC102724159A0A0B4J2E5 919 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 UNCXA6NJT0 531 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 FRAT2O75474 233 aaPredicted RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 HTR3BO95264 441 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 CEACAM5P06731 702 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 ZNF865P0CJ78 1059 aaPredicted RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 PLCG1P19174 1290 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 CRKP46108 304 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 PRKCQQ04759 706 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 TRDNQ13061 729 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 BECN1Q14457 450 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 PWP2Q15269 919 aaKnown RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 CWF19L2Q2TBE0 894 aaKnown RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 ZNF746Q6NUN9 644 aaPredicted RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 SASS6Q6UVJ0 657 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 WFDC3Q8IUB2 231 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 SLFN12Q8IYM2 578 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 MRRFQ96E11 262 aaKnown RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 COX4I2Q96KJ9 171 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 SLC26A8Q96RN1 970 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 TSPAN18Q96SJ8 248 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 MIPEPQ99797 713 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 EHMT1Q9H9B1 1298 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 MED4Q9NPJ6 270 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 ANGEL1Q9UNK9 670 aaKnown RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 OAS3Q9Y6K5 1087 aaKnown RBP5.14□□□□□ -1.59
VPS39-212ENST00000570023 RNF123Q5XPI4 1314 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 CNTNAP4Q9C0A0 1308 aa5.14□□□□□ -1.59
VPS39-212ENST00000570023 UQCRHLA0A096LP55 91 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 GRIN3BO60391 1043 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 UQCRHP07919 91 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 TNNT3P45378 269 aaPredicted RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 GTF2A1P52655 376 aaPredicted RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 YARSP54577 528 aaKnown RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 CCDC173Q0VFZ6 552 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 NKPD1Q17RQ9 610 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 METTL16Q86W50 562 aaKnown RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 SLITRK4Q8IW52 837 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 SPACA3Q8IXA5 215 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 REXO1Q8N1G1 1221 aaKnown RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 DNAJB8Q8NHS0 232 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 PPP1R13LQ8WUF5 828 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 RNF34Q969K3 372 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 PPP1R9BQ96SB3 815 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 DPH2Q9BQC3 489 aaPredicted RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 PAK6Q9NQU5 681 aaPredicted RBP5.13□□□□□ -1.59
VPS39-212ENST00000570023 REV1Q9UBZ9 1251 aa5.13□□□□□ -1.59
VPS39-212ENST00000570023 DDX41Q9UJV9 622 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms