RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 ARPP21Q9UBL0 812 aaPredicted RBP11.52□□□□□ -0.57
SPG11-214ENST00000558989 HPS5Q9UPZ3 1129 aa11.52□□□□□ -0.57
SPG11-214ENST00000558989 FMNL1O95466 1100 aaPredicted RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 CTGFP29279 349 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 PSMC4P43686 418 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 SOX10P56693 466 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 IRX3P78415 501 aaPredicted RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 LACTBP83111 547 aaPredicted RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 C17orf99Q6UX52 265 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 NAPBQ9H115 298 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 ASCC2Q9H1I8 757 aaPredicted RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 MKNK2Q9HBH9 465 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 ZCCHC17Q9NP64 241 aaKnown RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 EMILIN3Q9NT22 766 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 SWAP70Q9UH65 585 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 USTQ9Y2C2 406 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 KIAA0100Q14667 2235 aaKnown RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 RBM47A0AV96 593 aaKnown RBP11.51□□□□□ -0.57
SPG11-214ENST00000558989 GNAT2P19087 354 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 OSBPP22059 807 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 CTDSPL2Q05D32 466 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 C16orf86Q6ZW13 317 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 CHMP4CQ96CF2 233 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 SPATA32Q96LK8 384 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 TBC1D2Q9BYX2 928 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 NACAP1Q9BZK3 213 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 PNMA3Q9UL41 463 aa11.51□□□□□ -0.57
SPG11-214ENST00000558989 ADGRA2Q96PE1 1338 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 A0A1W2PRG0 241 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 C19orf81C9J6K1 198 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 ICA1Q05084 483 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 SH3D19Q5HYK7 790 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 FBXO46Q6PJ61 603 aaPredicted RBP11.5□□□□□ -0.57
SPG11-214ENST00000558989 USP17L2Q6R6M4 530 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 CWC27Q6UX04 472 aaKnown RBP11.5□□□□□ -0.57
SPG11-214ENST00000558989 ZNF589Q86UQ0 364 aaPredicted RBP11.5□□□□□ -0.57
SPG11-214ENST00000558989 SPICE1Q8N0Z3 855 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 P2RX7Q99572 595 aaKnown RBP11.5□□□□□ -0.57
SPG11-214ENST00000558989 PAGR1Q9BTK6 254 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 INCENPQ9NQS7 918 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 PTPN22Q9Y2R2 807 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 PTCH2Q9Y6C5 1203 aa11.5□□□□□ -0.57
SPG11-214ENST00000558989 BCRP11274 1271 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 SDSP20132 328 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 PABPC4Q13310 644 aaKnown RBP eCLIP11.49□□□□□ -0.57
SPG11-214ENST00000558989 MCMDC2Q4G0Z9 681 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 TMEM179Q6ZVK1 233 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 TRIM47Q96LD4 638 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 DIAPH3Q9NSV4 1193 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 GINM1Q9NU53 330 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 COL11A1P12107 1806 aaPredicted RBP11.49□□□□□ -0.57
SPG11-214ENST00000558989 MLLT3P42568 568 aaPredicted RBP11.49□□□□□ -0.57
SPG11-214ENST00000558989 PPARAQ07869 468 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 PKN2Q16513 984 aaKnown RBP11.49□□□□□ -0.57
SPG11-214ENST00000558989 SBK1Q52WX2 424 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 FAM47AQ5JRC9 791 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 OSBPL3Q9H4L5 887 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 HELLSQ9NRZ9 838 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 TOMM22Q9NS69 142 aa11.49□□□□□ -0.57
SPG11-214ENST00000558989 GREB1LQ9C091 1923 aaPredicted RBP11.48□□□□□ -0.57
SPG11-214ENST00000558989 CENPFP49454 3210 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 FOXP2O15409 715 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 EEF2P13639 858 aaKnown RBP11.48□□□□□ -0.57
SPG11-214ENST00000558989 VCAM1P19320 739 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 RASA1P20936 1047 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 USP14P54578 494 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 HAND2P61296 217 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 KIAA1755Q5JYT7 1200 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 TTC22Q5TAA0 569 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 GIMAP6Q6P9H5 292 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 ZNF444Q8N0Y2 327 aaPredicted RBP11.48□□□□□ -0.57
SPG11-214ENST00000558989 SH3TC2Q8TF17 1288 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 TANGO6Q9C0B7 1094 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 RPAP3Q9H6T3 665 aaPredicted RBP11.48□□□□□ -0.57
SPG11-214ENST00000558989 ARHGEF10LQ9HCE6 1279 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 SLC45A1Q9Y2W3 748 aa11.48□□□□□ -0.57
SPG11-214ENST00000558989 GSPT1P15170 499 aaKnown RBP11.47□□□□□ -0.57
SPG11-214ENST00000558989 FCGRTP55899 365 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 HERVK_113P62684 666 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 ARHGEF6Q15052 776 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 RRP12Q5JTH9 1297 aaKnown RBP11.47□□□□□ -0.57
SPG11-214ENST00000558989 CCDC17Q96LX7 622 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 KIAA1683Q9H0B3 1180 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 TXNRD2Q9NNW7 524 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 GABRQQ9UN88 632 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 PARP14Q460N5 1801 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 CCDC171Q6TFL3 1326 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 MYPNQ86TC9 1320 aa11.47□□□□□ -0.57
SPG11-214ENST00000558989 TNPO2O14787 897 aaKnown RBP11.46□□□□□ -0.57
SPG11-214ENST00000558989 NCLP19338 710 aaKnown RBP11.46□□□□□ -0.57
SPG11-214ENST00000558989 PRKCZQ05513 592 aa11.46□□□□□ -0.57
SPG11-214ENST00000558989 WDR78Q5VTH9 848 aa11.46□□□□□ -0.57
SPG11-214ENST00000558989 SIAH1Q8IUQ4 282 aa11.46□□□□□ -0.57
SPG11-214ENST00000558989 RAET1EQ8TD07 263 aa11.46□□□□□ -0.57
SPG11-214ENST00000558989 ISY1Q9ULR0 285 aaKnown RBP11.46□□□□□ -0.57
SPG11-214ENST00000558989 USP17L15C9J2P7 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L13C9JLJ4 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L11C9JVI0 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L18D6R9N7 530 aa11.46□□□□□ -0.58
SPG11-214ENST00000558989 USP17L22D6RA61 530 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms