RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TOGARAM1Q9Y4F4 1720 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 PLCH1Q4KWH8 1693 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 AFMP43652 599 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 HLFQ16534 295 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 KLHL10Q6JEL2 608 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 LEKR1Q6ZMV7 388 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 SLC35F6Q8N357 371 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 IRX2Q9BZI1 471 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-231ENST00000557433 MED4Q9NPJ6 270 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 ABHD10Q9NUJ1 306 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 A0A087X0B3 334 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 H3BQF6 201 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 GTPBP6O43824 516 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-231ENST00000557433 GPTP24298 496 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 ATP2C1P98194 919 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-231ENST00000557433 SYNE4Q8N205 404 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 LCORLQ8N3X6 602 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 FAM71BQ8TC56 605 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 EPSTI1Q96J88 318 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 VIPAS39Q9H9C1 493 aa18.4■□□□□ 0.54
SHMT2-231ENST00000557433 PUF60Q9UHX1 559 aaKnown RBP18.4■□□□□ 0.54
SHMT2-231ENST00000557433 N4BP3O15049 544 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 KRT31Q15323 416 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 PKN1Q16512 942 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 HSP90B2PQ58FF3 399 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 ZNF662Q6ZS27 426 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 CATIPQ7Z7H3 387 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 CPLX3Q8WVH0 158 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 RPGRIP1Q96KN7 1286 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 TNKSO95271 1327 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 DDAH1O94760 285 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 ATP2B1P20020 1258 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 LMAN1P49257 510 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 FXR1P51114 621 aaKnown RBP eCLIP18.39■□□□□ 0.53
SHMT2-231ENST00000557433 COPB1P53618 953 aaKnown RBP18.39■□□□□ 0.53
SHMT2-231ENST00000557433 STX17P56962 302 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 FUT2Q10981 343 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 PAK1Q13153 545 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 TTC38Q5R3I4 469 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 ZKSCAN3Q9BRR0 538 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 PDE11AQ9HCR9 933 aa18.39■□□□□ 0.53
SHMT2-231ENST00000557433 MYH6P13533 1939 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 CAPN2P17655 700 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 EHBP1Q8NDI1 1231 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 CCDC148Q8NFR7 591 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 TNFRSF25Q93038 417 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 PNKPQ96T60 521 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 HAUS4Q9H6D7 363 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 ABCB6Q9NP58 842 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 MYO6Q9UM54 1294 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 CTNND2Q9UQB3 1225 aa18.38■□□□□ 0.53
SHMT2-231ENST00000557433 PRKAB2O43741 272 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ARHGAP25P42331 645 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 AMPD2Q01433 879 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 E2F4Q16254 413 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 MAP9Q49MG5 647 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ZNF658Q5TYW1 1059 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ZNF34Q8IZ26 560 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 CTCFLQ8NI51 663 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 PIGBQ92521 554 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ZSWIM4Q9H7M6 989 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 FEZ2Q9UHY8 353 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 A0A1W2PQC6 194 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 H7C1D1 291 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ERVK-24P63145 666 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 MCM6Q14566 821 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 TCP11X2Q5H9J9 407 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ARL6IP4Q66PJ3 421 aaKnown RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 CCDC82Q8N4S0 544 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ZSCAN10Q96SZ4 725 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 NUP88Q99567 741 aaPredicted RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 VPS54Q9P1Q0 977 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 MKRN1Q9UHC7 482 aaKnown RBP18.37■□□□□ 0.53
SHMT2-231ENST00000557433 ASAP1Q9ULH1 1129 aa18.37■□□□□ 0.53
SHMT2-231ENST00000557433 PSMD14O00487 310 aa18.36■□□□□ 0.53
SHMT2-231ENST00000557433 CYP19A1P11511 503 aaPredicted RBP18.36■□□□□ 0.53
SHMT2-231ENST00000557433 CASP8Q14790 479 aa18.36■□□□□ 0.53
SHMT2-231ENST00000557433 RRAGBQ5VZM2 374 aa18.36■□□□□ 0.53
SHMT2-231ENST00000557433 VPS18Q9P253 973 aa18.36■□□□□ 0.53
SHMT2-231ENST00000557433 XDHP47989 1333 aa18.36■□□□□ 0.53
SHMT2-231ENST00000557433 KCNJ18B7U540 433 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 MYL1P05976 194 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 FGRP09769 529 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 GTF2E1P29083 439 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 IL6STP40189 918 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 KCNJ12Q14500 433 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 PDXDC2PQ6P474 469 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 IQCA1Q86XH1 822 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 ACRBPQ8NEB7 543 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 BBXQ8WY36 941 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 LRP2BPQ9P2M1 347 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 TARSL2A2RTX5 802 aaKnown RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 KRT9P35527 623 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 CKAP4Q07065 602 aaKnown RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 IFIT1BQ5T764 474 aaKnown RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 CMTR1Q8N1G2 835 aaKnown RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 CDC5LQ99459 802 aaKnown RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 RASSF4Q9H2L5 321 aa18.35■□□□□ 0.53
SHMT2-231ENST00000557433 EPN1Q9Y6I3 576 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-231ENST00000557433 LONP1P36776 959 aaKnown RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms