RNA–Protein interactions for RNA: ENST00000556994.5

SRP54-213, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SRP54, Length 2,327 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-213ENST00000556994 CTAGE1Q96RT6 745 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 TRIM10Q9UDY6 481 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 LCMT1Q9UIC8 334 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 MROH5Q6ZUA9 1318 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 NID2Q14112 1375 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 PHACTR2O75167 634 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 PTGDRQ13258 359 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 NCAPH2Q6IBW4 605 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 HDXQ7Z353 690 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 GSDMAQ96QA5 445 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 PHF20Q9BVI0 1012 aa12.9□□□□□ -0.34
SRP54-213ENST00000556994 RNF26Q9BY78 433 aaPredicted RBP12.9□□□□□ -0.34
SRP54-213ENST00000556994 MYH6P13533 1939 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 CYP7A1P22680 504 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 SEC23AQ15436 765 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 NOA1Q8NC60 698 aaKnown RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 MSANTD4Q8NCY6 345 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 EXOC4Q96A65 974 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 CHP1Q99653 195 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 NAPGQ99747 312 aaPredicted RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 CARD10Q9BWT7 1032 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 ABHD10Q9NUJ1 306 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 RNF216Q9NWF9 866 aaPredicted RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 ABCF2Q9UG63 623 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 FEZ2Q9UHY8 353 aaPredicted RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 RAB21Q9UL25 225 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 L1RE1Q9UN81 338 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 TFR2Q9UP52 801 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 FAN1Q9Y2M0 1017 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 XDHP47989 1333 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 ADAMTS3O15072 1205 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 XBP1P17861 261 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 ARHGAP25P42331 645 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 MUM1L1Q5H9M0 696 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 CADPS2Q86UW7 1296 aa12.89□□□□□ -0.35
SRP54-213ENST00000556994 ENAHQ8N8S7 591 aaPredicted RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 HNRNPLLQ8WVV9 542 aaKnown RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 TTF2Q9UNY4 1162 aaKnown RBP12.89□□□□□ -0.35
SRP54-213ENST00000556994 CTAGE15A4D2H0 777 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 ENC1O14682 589 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 TRIM66O15016 1216 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 CTAGE8P0CG41 777 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 CYP19A1P11511 503 aaPredicted RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 GNAT2P19087 354 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 KRT9P35527 623 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 USP5P45974 858 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 CTAGE6Q86UF2 777 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 DZIP3Q86Y13 1208 aaKnown RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 CTAGE4Q8IX94 777 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 MTRQ99707 1265 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 RNF41Q9H4P4 317 aaPredicted RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 GUCA1BQ9UMX6 200 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 MYH3P11055 1940 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 COL5A2P05997 1499 aaPredicted RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 WTIPA6NIX2 430 aaPredicted RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 ERLIN1O75477 346 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 VEGFAP15692 232 aaPredicted RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 COPB1P53618 953 aaKnown RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 EVX2Q03828 476 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 FUT2Q10981 343 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 TTC38Q5R3I4 469 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 TMTC1Q8IUR5 882 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 ESR2Q92731 530 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 CCDC102AQ96A19 550 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 HDAC6Q9UBN7 1215 aa12.88□□□□□ -0.35
SRP54-213ENST00000556994 SOS2Q07890 1332 aaPredicted RBP12.88□□□□□ -0.35
SRP54-213ENST00000556994 KDM4FA0A1W2PPD8 638 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 PES1O00541 588 aaKnown RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 MCM7P33993 719 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 CASP8Q14790 479 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 IL17AQ16552 155 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 IFIT1BQ5T764 474 aaKnown RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 CYP26C1Q6V0L0 522 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 C10orf67Q8IYJ2 551 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 FERMT2Q96AC1 680 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 ZSCAN10Q96SZ4 725 aaPredicted RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 TRIM34Q9BYJ4 488 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 MYO6Q9UM54 1294 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 GDAQ9Y2T3 454 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 PNPLA7Q6ZV29 1317 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 TOGARAM1Q9Y4F4 1720 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 KCNJ18B7U540 433 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 POTEB2H3BUK9 544 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 SEMA3EO15041 775 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 PRPF3O43395 683 aaKnown RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 ACTN2P35609 894 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 DYNLL1P63167 89 aaKnown RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 UBXN1Q04323 297 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 KCNJ12Q14500 433 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 NPY5RQ15761 445 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 CT47A1Q5JQC4 288 aaPredicted RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 SUSD4Q5VX71 490 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 FOXR1Q6PIV2 292 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 PIK3AP1Q6ZUJ8 805 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 GOLGA5Q8TBA6 731 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 NELFBQ8WX92 580 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 CCDC51Q96ER9 411 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 LIMA1Q9UHB6 759 aaKnown RBP12.87□□□□□ -0.35
SRP54-213ENST00000556994 MYH2Q9UKX2 1941 aa12.87□□□□□ -0.35
SRP54-213ENST00000556994 ITIH6Q6UXX5 1313 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms