RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 TMX2Q9Y320 296 aa11.43□□□□□ -0.58
SMARCD1-206ENST00000549274 SLC12A7Q9Y666 1083 aa11.43□□□□□ -0.58
SMARCD1-206ENST00000549274 SNCAIPQ9Y6H5 919 aa11.43□□□□□ -0.58
SMARCD1-206ENST00000549274 PHIPQ8WWQ0 1821 aa11.43□□□□□ -0.58
SMARCD1-206ENST00000549274 EEF2P13639 858 aaKnown RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ZNF157P51786 506 aaPredicted RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 GTF2A2P52657 109 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 BACE1P56817 501 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 INHBEP58166 350 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ANTXR2P58335 489 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ATP2B2Q01814 1243 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 EVX2Q03828 476 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 SNAPC2Q13487 334 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 SEC23AQ15436 765 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ASPRV1Q53RT3 343 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 GPATCH4Q5T3I0 446 aaKnown RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 RGMBQ6NW40 437 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 USP17L2Q6R6M4 530 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 SAMD1Q6SPF0 538 aaPredicted RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 Q6ZUG5 572 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 PROCA1Q8NCQ7 364 aaPredicted RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 PNMA1Q8ND90 353 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 CTCFLQ8NI51 663 aaPredicted RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 IGDCC4Q8TDY8 1250 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 DCAF4Q8WV16 495 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 OPTNQ96CV9 577 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ZNF274Q96GC6 653 aaPredicted RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 UPF3BQ9BZI7 483 aaKnown RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ELP3Q9H9T3 547 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 LY9Q9HBG7 655 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 RBM28Q9NW13 759 aaKnown RBP11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 CLIP2Q9UDT6 1046 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 TAF6LQ9Y6J9 622 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 ZHX2Q9Y6X8 837 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 PTPRFP10586 1907 aa11.42□□□□□ -0.58
SMARCD1-206ENST00000549274 MANSC4A6NHS7 340 aaPredicted RBP11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 SMIM22K7EJ46 135 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 WDR46O15213 610 aaKnown RBP11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 ZBTB43O43298 467 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 CETPP11597 493 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 GUCY1A2P33402 732 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 EVCP57679 992 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 BECN1Q14457 450 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 TMEM132AQ24JP5 1023 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 SH3D19Q5HYK7 790 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 GMCL1Q96IK5 515 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 C12orf42Q96LP6 360 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 KIF2CQ99661 725 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 LZTS2Q9BRK4 669 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 VCPKMTQ9H867 229 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 ZCCHC17Q9NP64 241 aaKnown RBP11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 INCENPQ9NQS7 918 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 TSHZ2Q9NRE2 1034 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 IL17RBQ9NRM6 502 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 LIMCH1Q9UPQ0 1083 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 KCNH4Q9UQ05 1017 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 AFG3L2Q9Y4W6 797 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 TACC3Q9Y6A5 838 aa11.41□□□□□ -0.58
SMARCD1-206ENST00000549274 CDKL5O76039 1030 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 FDX1P10109 184 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 ANP32AP39687 249 aaKnown RBP11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 SREBF2Q12772 1141 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 TRAF1Q13077 416 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 SPP2Q13103 211 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 RRP1BQ14684 758 aaKnown RBP11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 OTUD7BQ6GQQ9 843 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 APOA5Q6Q788 366 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 FAM160B2Q86V87 743 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 HSCBQ8IWL3 235 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 ZNF654Q8IZM8 581 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 GTF3C2Q8WUA4 911 aaPredicted RBP11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 BRF1Q92994 677 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 SNX21Q969T3 373 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 OTUD5Q96G74 571 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 WNK4Q96J92 1243 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 TMEM47Q9BQJ4 181 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 ZKSCAN3Q9BRR0 538 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 RBM27Q9P2N5 1060 aaKnown RBP11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 PNMA3Q9UL41 463 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 PNMA2Q9UL42 364 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 LOC285556D6RIA3 1793 aa11.4□□□□□ -0.58
SMARCD1-206ENST00000549274 NID2Q14112 1375 aa11.4□□□□□ -0.59
SMARCD1-206ENST00000549274 A0A0G2JLL6 359 aaPredicted RBP11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 KLF18A0A0U1RQI7 1052 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 RASSF10A6NK89 507 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 F5H6K3 240 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 PLA2G6O60733 806 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 SLC10A3P09131 477 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 PARP1P09874 1014 aaKnown RBP11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 SMARCA1P28370 1054 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 SLC1A4P43007 532 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 METAP2P50579 478 aaKnown RBP eCLIP11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 AK2P54819 239 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 KLRC3Q07444 240 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 NOGQ13253 232 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 SPRYD7Q5W111 196 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 SLFN13Q68D06 897 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 CHST3Q7LGC8 479 aa11.39□□□□□ -0.59
SMARCD1-206ENST00000549274 PRRT2Q7Z6L0 340 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms