RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 RNF225M0QZC1 329 aaPredicted RBP15.37■□□□□ 0.05
PTPN1-202ENST00000541713 SEC23AQ15436 765 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 LETM2Q2VYF4 491 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 TMCO3Q6UWJ1 677 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 RAD9BQ6WBX8 426 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 TMTC2Q8N394 836 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 FBXL16Q8N461 479 aa15.37■□□□□ 0.05
PTPN1-202ENST00000541713 STRCP1A6NGW2 1772 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 FXR1P51114 621 aaKnown RBP eCLIP15.36■□□□□ 0.05
PTPN1-202ENST00000541713 TROAPQ12815 778 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 ALX1Q15699 326 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 TRIM65Q6PJ69 517 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 DRC1Q96MC2 740 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 CRNKL1Q9BZJ0 848 aaKnown RBP15.36■□□□□ 0.05
PTPN1-202ENST00000541713 PLEKHA4Q9H4M7 779 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 GUCA1BQ9UMX6 200 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 CCDC194A0A1B0GVG4 234 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 AKR1B15C9JRZ8 316 aaPredicted RBP15.36■□□□□ 0.05
PTPN1-202ENST00000541713 RIMBP2O15034 1052 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 ZSCAN12O43309 604 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 MLKLQ8NB16 471 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 SH3RF3Q8TEJ3 882 aaPredicted RBP15.36■□□□□ 0.05
PTPN1-202ENST00000541713 USP54Q70EL1 1684 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 TSPY3P0CV98 308 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 TSPY8P0CW00 308 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 STAT6P42226 847 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 MORC3Q14149 939 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 PARP10Q53GL7 1025 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 CAPZA3Q96KX2 299 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 SUGCTQ9HAC7 445 aa15.36■□□□□ 0.05
PTPN1-202ENST00000541713 PHRF1Q9P1Y6 1649 aaKnown RBP15.35■□□□□ 0.05
PTPN1-202ENST00000541713 UBXN1Q04323 297 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 PPP2R3AQ06190 1150 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 CCDC178Q5BJE1 867 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 JAKMIP3Q5VZ66 844 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 NSUN4Q96CB9 384 aaKnown RBP15.35■□□□□ 0.05
PTPN1-202ENST00000541713 BPIFA3Q9BQP9 254 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 FAM205AQ6ZU69 1335 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 ARHGAP6O43182 974 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 SSBP05455 408 aaKnown RBP eCLIP15.35■□□□□ 0.05
PTPN1-202ENST00000541713 TYW1BQ6NUM6 668 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 USP17L2Q6R6M4 530 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 PSMB7Q99436 277 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 TNS2Q63HR2 1409 aa15.35■□□□□ 0.05
PTPN1-202ENST00000541713 ZBTB22O15209 634 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 RAD51AP2Q09MP3 1159 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 FILIP1LQ4L180 1135 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 ZNF444Q8N0Y2 327 aaPredicted RBP15.34■□□□□ 0.05
PTPN1-202ENST00000541713 PNMA1Q8ND90 353 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 PSDA5PKW4 1024 aaPredicted RBP15.34■□□□□ 0.05
PTPN1-202ENST00000541713 ZMYND10O75800 440 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 PLCD1P51178 756 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 NELFBQ8WX92 580 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 ZNF512BQ96KM6 892 aaPredicted RBP15.34■□□□□ 0.05
PTPN1-202ENST00000541713 RNF26Q9BY78 433 aaPredicted RBP15.34■□□□□ 0.05
PTPN1-202ENST00000541713 DACH1Q9UI36 760 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 TAF1P21675 1872 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 FRMPD2Q68DX3 1309 aaPredicted RBP15.34■□□□□ 0.05
PTPN1-202ENST00000541713 SCG2P13521 617 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 UBA7P41226 1012 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 IL17AQ16552 155 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 TMEM60Q9H2L4 133 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 POLD4Q9HCU8 107 aa15.34■□□□□ 0.05
PTPN1-202ENST00000541713 SLFN14P0C7P3 912 aa15.33■□□□□ 0.05
PTPN1-202ENST00000541713 TMTC3Q6ZXV5 915 aa15.33■□□□□ 0.05
PTPN1-202ENST00000541713 CHP1Q99653 195 aa15.33■□□□□ 0.05
PTPN1-202ENST00000541713 PARP3Q9Y6F1 533 aa15.33■□□□□ 0.05
PTPN1-202ENST00000541713 KIF1AQ12756 1690 aa15.33■□□□□ 0.04
PTPN1-202ENST00000541713 PHF20Q9BVI0 1012 aa15.33■□□□□ 0.04
PTPN1-202ENST00000541713 KRT9P35527 623 aa15.33■□□□□ 0.04
PTPN1-202ENST00000541713 KLK7P49862 253 aa15.33■□□□□ 0.04
PTPN1-202ENST00000541713 BIN2Q9UBW5 565 aaPredicted RBP15.33■□□□□ 0.04
PTPN1-202ENST00000541713 TJP1Q07157 1748 aa15.33■□□□□ 0.04
PTPN1-202ENST00000541713 WDR19Q8NEZ3 1342 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 DYMQ7RTS9 669 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 ENOX1Q8TC92 643 aaKnown RBP15.32■□□□□ 0.04
PTPN1-202ENST00000541713 TRIM47Q96LD4 638 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 FEZ1Q99689 392 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 RTL9Q8NET4 1388 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 XDHP47989 1333 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 KDM4FA0A1W2PPD8 638 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 IDEP14735 1019 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 KRT31Q15323 416 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 TMEM139Q8IV31 216 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 IQUBQ8NA54 791 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 NEK11Q8NG66 645 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 MTRQ99707 1265 aa15.32■□□□□ 0.04
PTPN1-202ENST00000541713 C6orf229H3BNL8 230 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 KIF2AO00139 706 aaPredicted RBP15.31■□□□□ 0.04
PTPN1-202ENST00000541713 SRGAP2O75044 1071 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 CCDC175P0C221 793 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 PMS1P54277 932 aaKnown RBP15.31■□□□□ 0.04
PTPN1-202ENST00000541713 SLC35F6Q8N357 371 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 KANSL2Q9H9L4 492 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 HDAC6Q9UBN7 1215 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 ZNF804BA4D1E1 1349 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 PNPLA7Q6ZV29 1317 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 LDHBP07195 334 aaKnown RBP15.31■□□□□ 0.04
PTPN1-202ENST00000541713 PRCPP42785 496 aa15.31■□□□□ 0.04
PTPN1-202ENST00000541713 SRRTQ9BXP5 876 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms