RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 TCP11L1Q9NUJ3 509 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 BRPF3Q9ULD4 1205 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 ZBTB21Q9ULJ3 1066 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 ANGEL1Q9UNK9 670 aaKnown RBP10.98□□□□□ -0.65
DDX55-208ENST00000541259 BAZ2BQ9UIF8 2168 aaKnown RBP10.98□□□□□ -0.65
DDX55-208ENST00000541259 WDR19Q8NEZ3 1342 aa10.98□□□□□ -0.65
DDX55-208ENST00000541259 PTPRFP10586 1907 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 UBE2Q2LH0YL09 131 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 PPP1R12BO60237 982 aaPredicted RBP10.97□□□□□ -0.65
DDX55-208ENST00000541259 CELF2O95319 508 aaKnown RBP10.97□□□□□ -0.65
DDX55-208ENST00000541259 MAP3K9P80192 1104 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 FGD1P98174 961 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 TTLL12Q14166 644 aaPredicted RBP10.97□□□□□ -0.65
DDX55-208ENST00000541259 WTAPQ15007 396 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 CST9Q5W186 159 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 TMEM179Q6ZVK1 233 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 DDX27Q96GQ7 796 aaKnown RBP10.97□□□□□ -0.65
DDX55-208ENST00000541259 CLMNQ96JQ2 1002 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 TMEM87BQ96K49 555 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 CRISPLD2Q9H0B8 497 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 MTMR4Q9NYA4 1195 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 CLIP2Q9UDT6 1046 aa10.97□□□□□ -0.65
DDX55-208ENST00000541259 MYH6P13533 1939 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 PASKQ96RG2 1323 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 ERICH2A1L162 156 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 POTEFA5A3E0 1075 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 ST18O60284 1047 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 TOMM70O94826 608 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 LARGE1O95461 756 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 EEF2P13639 858 aaKnown RBP10.96□□□□□ -0.65
DDX55-208ENST00000541259 LIFRP42702 1097 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 IREB2P48200 963 aaKnown RBP10.96□□□□□ -0.65
DDX55-208ENST00000541259 NOVP48745 357 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 ATP2B2Q01814 1243 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 VGLL4Q14135 290 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 NBR1Q14596 966 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 SART3Q15020 963 aaKnown RBP10.96□□□□□ -0.65
DDX55-208ENST00000541259 MAP3K11Q16584 847 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 RAB11FIP4Q86YS3 637 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 SCYL3Q8IZE3 742 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 FBXL16Q8N461 479 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 ACER1Q8TDN7 264 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 ANKS1AQ92625 1134 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 CHMP4CQ96CF2 233 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 TMEM47Q9BQJ4 181 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 MTA3Q9BTC8 594 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 TMEM121BQ9BXQ6 578 aaPredicted RBP10.96□□□□□ -0.65
DDX55-208ENST00000541259 KANSL2Q9H9L4 492 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 TPCN1Q9ULQ1 816 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 STX8Q9UNK0 236 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 SNCAIPQ9Y6H5 919 aa10.96□□□□□ -0.65
DDX55-208ENST00000541259 KLF18A0A0U1RQI7 1052 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 A0A1W2PRG0 241 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 ASNSP08243 561 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 PTPRAP18433 802 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 ECE1P42892 770 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 NT5C2P49902 561 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 ICA1Q05084 483 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 CCDC178Q5BJE1 867 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 NOL9Q5SY16 702 aaKnown RBP10.95□□□□□ -0.66
DDX55-208ENST00000541259 LDLRAD1Q5T700 205 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 IFIT1BQ5T764 474 aaKnown RBP10.95□□□□□ -0.66
DDX55-208ENST00000541259 NFXL1Q6ZNB6 911 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 RASGRP2Q7LDG7 609 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 ARMC9Q7Z3E5 817 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 DGKHQ86XP1 1220 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 SMC1BQ8NDV3 1235 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 RBM46Q8TBY0 533 aaKnown RBP10.95□□□□□ -0.66
DDX55-208ENST00000541259 MYL10Q9BUA6 226 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 ELP3Q9H9T3 547 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 GBA2Q9HCG7 927 aaPredicted RBP10.95□□□□□ -0.66
DDX55-208ENST00000541259 NYAP2Q9P242 653 aa10.95□□□□□ -0.66
DDX55-208ENST00000541259 NAP1L2Q9ULW6 460 aaPredicted RBP10.95□□□□□ -0.66
DDX55-208ENST00000541259 CCDC69A6NI79 296 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 TTLL1O95922 423 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 TOP1P11387 765 aaKnown RBP10.94□□□□□ -0.66
DDX55-208ENST00000541259 RXRAP19793 462 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 PDIA3P30101 505 aaKnown RBP10.94□□□□□ -0.66
DDX55-208ENST00000541259 EVCP57679 992 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 STK3Q13188 491 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 ANKRD1Q15327 319 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 ME3Q16798 604 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 SGMS1Q86VZ5 419 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 ANKRD13AQ8IZ07 590 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 ZNF654Q8IZM8 581 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 LRRC47Q8N1G4 583 aaKnown RBP10.94□□□□□ -0.66
DDX55-208ENST00000541259 SNX21Q969T3 373 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 MKL1Q969V6 931 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 TBC1D2Q9BYX2 928 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 KAT14Q9H8E8 782 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 PICK1Q9NRD5 415 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 GINM1Q9NU53 330 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 LIMCH1Q9UPQ0 1083 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 HPS5Q9UPZ3 1129 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 MTMR7Q9Y216 660 aa10.94□□□□□ -0.66
DDX55-208ENST00000541259 USP17L5A8MUK1 530 aa10.93□□□□□ -0.66
DDX55-208ENST00000541259 DTNBO60941 627 aa10.93□□□□□ -0.66
DDX55-208ENST00000541259 CCT2P78371 535 aaKnown RBP10.93□□□□□ -0.66
DDX55-208ENST00000541259 DGKZQ13574 1117 aa10.93□□□□□ -0.66
DDX55-208ENST00000541259 ZYXQ15942 572 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms