RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 USP17L18D6R9N7 530 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 USP17L22D6RA61 530 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 USP17L17D6RBQ6 530 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 USP17L19D6RCP7 530 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 USP17L20D6RJB6 530 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 CTGFP29279 349 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 PSMC4P43686 418 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 HERVK_113P62684 666 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 USP17L24Q0WX57 530 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 RRP12Q5JTH9 1297 aaKnown RBP10.95□□□□□ -0.66
SNHG1-215ENST00000540904 FBXO46Q6PJ61 603 aaPredicted RBP10.95□□□□□ -0.66
SNHG1-215ENST00000540904 LPAR1Q92633 364 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 CEP95Q96GE4 821 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 TRIM47Q96LD4 638 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 DSCC1Q9BVC3 393 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 TANGO6Q9C0B7 1094 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 VCPKMTQ9H867 229 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 CLIP2Q9UDT6 1046 aa10.95□□□□□ -0.66
SNHG1-215ENST00000540904 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.95□□□□□ -0.66
SNHG1-215ENST00000540904 PTPRFP10586 1907 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 IGKV6D-41A0A0C4DH26 115 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 TSPY2A6NKD2 308 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 HAX1O00165 279 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 ZNF213O14771 459 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 RANBP6O60518 1105 aaKnown RBP10.94□□□□□ -0.66
SNHG1-215ENST00000540904 PEX10O60683 326 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 FCGRTP55899 365 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 FAM110CQ1W6H9 321 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 IFFO2Q5TF58 517 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 CATSPERGQ6ZRH7 1159 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 NEDD1Q8NHV4 660 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 PAGR1Q9BTK6 254 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 GOPCQ9HD26 462 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 MTMR4Q9NYA4 1195 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 NYAP2Q9P242 653 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 HPS5Q9UPZ3 1129 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 PTPN22Q9Y2R2 807 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 TACC3Q9Y6A5 838 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 LOC285556D6RIA3 1793 aa10.94□□□□□ -0.66
SNHG1-215ENST00000540904 RAD50Q92878 1312 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 CCDC85CA6NKD9 419 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 ORC4O43929 436 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 TTLL1O95922 423 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 GNRH1P01148 92 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 BMP2KLQ5H9B9 411 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 AKNAD1Q5T1N1 836 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 MFSD6Q6ZSS7 791 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 TBC1D10CQ8IV04 446 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 GPRC5AQ8NFJ5 357 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 GTF3C2Q8WUA4 911 aaPredicted RBP10.93□□□□□ -0.66
SNHG1-215ENST00000540904 NBPF3Q9H094 633 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 TXNRD2Q9NNW7 524 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 PPP4R2Q9NY27 417 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 CTNNA3Q9UI47 895 aa10.93□□□□□ -0.66
SNHG1-215ENST00000540904 PLIN4Q96Q06 1357 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 F5H6K3 240 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 TNPO2O14787 897 aaKnown RBP10.92□□□□□ -0.66
SNHG1-215ENST00000540904 WDR46O15213 610 aaKnown RBP10.92□□□□□ -0.66
SNHG1-215ENST00000540904 SGSM2O43147 1006 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 NMT2O60551 498 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 FLOT1O75955 427 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 FGRP09769 529 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 HOXD10P28358 340 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 KLRC3Q07444 240 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 COG2Q14746 738 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 IMMTQ16891 758 aaKnown RBP10.92□□□□□ -0.66
SNHG1-215ENST00000540904 ERICH6BQ5W0A0 696 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 POTEEQ6S8J3 1075 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 LRRC47Q8N1G4 583 aaKnown RBP10.92□□□□□ -0.66
SNHG1-215ENST00000540904 STAG1Q8WVM7 1258 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 NUP88Q99567 741 aaPredicted RBP10.92□□□□□ -0.66
SNHG1-215ENST00000540904 RNF41Q9H4P4 317 aaPredicted RBP10.92□□□□□ -0.66
SNHG1-215ENST00000540904 IL17RBQ9NRM6 502 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 RBPJLQ9UBG7 517 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 MORF4L1Q9UBU8 362 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 SRRDQ9UH36 339 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 STX8Q9UNK0 236 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 PTCH2Q9Y6C5 1203 aa10.92□□□□□ -0.66
SNHG1-215ENST00000540904 MYPNQ86TC9 1320 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 SPDYE16A6NNV3 312 aaPredicted RBP10.91□□□□□ -0.66
SNHG1-215ENST00000540904 NDUFB10O96000 172 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 PCP11498 1178 aaKnown RBP10.91□□□□□ -0.66
SNHG1-215ENST00000540904 ERVK-9P63128 1117 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 ERVK-24P63145 666 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 PTH1RQ03431 593 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 PRKCZQ05513 592 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 Q3C1V9 767 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 FAM83BQ5T0W9 1011 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 CCAR1Q8IX12 1150 aaKnown RBP10.91□□□□□ -0.66
SNHG1-215ENST00000540904 MKL1Q969V6 931 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 COA7Q96BR5 231 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 HOXC10Q9NYD6 342 aa10.91□□□□□ -0.66
SNHG1-215ENST00000540904 NEDD4P46934 1319 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 CNMDO75829 334 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 PRMT2P55345 433 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 SLC9C1Q4G0N8 1177 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 PPP4R3BQ5MIZ7 849 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 LBX2Q6XYB7 198 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 KIAA1211Q6ZU35 1233 aa10.9□□□□□ -0.66
SNHG1-215ENST00000540904 GMCL1P1Q8NEA9 526 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms