RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SART3Q15020 963 aaKnown RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 ANKRD1Q15327 319 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 SH3D19Q5HYK7 790 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 ZNF654Q8IZM8 581 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 ZNF274Q96GC6 653 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 HHIPL1Q96JK4 782 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 CLMNQ96JQ2 1002 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 TOMM22Q9NS69 142 aa12.38□□□□□ -0.43
VPS33A-204ENST00000540669 FAM217BQ9NTX9 383 aaPredicted RBP12.38□□□□□ -0.43
VPS33A-204ENST00000540669 USP17L5A8MUK1 530 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 PFKFB2O60825 505 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 PDIA3P30101 505 aaKnown RBP12.37□□□□□ -0.43
VPS33A-204ENST00000540669 GJA5P36382 358 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 FUT2Q10981 343 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 PPIL2Q13356 520 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 TTLL12Q14166 644 aaPredicted RBP12.37□□□□□ -0.43
VPS33A-204ENST00000540669 ME3Q16798 604 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 SLC35G1Q2M3R5 365 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 KIAA1755Q5JYT7 1200 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 RASGRP2Q7LDG7 609 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 ARMC9Q7Z3E5 817 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 CCDC84Q86UT8 332 aaPredicted RBP12.37□□□□□ -0.43
VPS33A-204ENST00000540669 TMTC2Q8N394 836 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 PNMA1Q8ND90 353 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 ACER1Q8TDN7 264 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 GTF3C6Q969F1 213 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 GMCL1Q96IK5 515 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 CABP5Q9NP86 173 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 RBM19Q9Y4C8 960 aaKnown RBP12.37□□□□□ -0.43
VPS33A-204ENST00000540669 AFG3L2Q9Y4W6 797 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 MYH6P13533 1939 aa12.37□□□□□ -0.43
VPS33A-204ENST00000540669 PDHBP11177 359 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 PPATQ06203 517 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 APOBRQ0VD83 1088 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 GRM4Q14833 912 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 NTRK3Q16288 839 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 IFIT1BQ5T764 474 aaKnown RBP12.36□□□□□ -0.43
VPS33A-204ENST00000540669 SAPCD2Q86UD0 394 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 ERO1BQ86YB8 467 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 VCPKMTQ9H867 229 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 STX8Q9UNK0 236 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 LIMCH1Q9UPQ0 1083 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 TLL2Q9Y6L7 1015 aa12.36□□□□□ -0.43
VPS33A-204ENST00000540669 A0A0G2JLL6 359 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 KLF18A0A0U1RQI7 1052 aa12.35□□□□□ -0.43
VPS33A-204ENST00000540669 PALM3A6NDB9 673 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 K7ELQ4 463 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 DEFB115Q30KQ5 88 aa12.35□□□□□ -0.43
VPS33A-204ENST00000540669 PRRT2Q7Z6L0 340 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 LRRC47Q8N1G4 583 aaKnown RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 ZNF280CQ8ND82 737 aa12.35□□□□□ -0.43
VPS33A-204ENST00000540669 TMX3Q96JJ7 454 aa12.35□□□□□ -0.43
VPS33A-204ENST00000540669 BEGAINQ9BUH8 593 aa12.35□□□□□ -0.43
VPS33A-204ENST00000540669 SH2B1Q9NRF2 756 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 RBBP6Q7Z6E9 1792 aaKnown RBP12.35□□□□□ -0.43
VPS33A-204ENST00000540669 COL11A1P12107 1806 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-204ENST00000540669 ERICH2A1L162 156 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 GOLGA8BA8MQT2 603 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 UBE2Q2LH0YL09 131 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 MPHOSPH10O00566 681 aaKnown RBP12.34□□□□□ -0.43
VPS33A-204ENST00000540669 PLA2G6O60733 806 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 CTDNEP1O95476 244 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 NDUFB10O96000 172 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 BACE1P56817 501 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 ZNF543Q08ER8 600 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 SCRN1Q12765 414 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 RAB3GAP1Q15042 981 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 PPP2R5BQ15173 497 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 BTNL9Q6UXG8 535 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 RASAL3Q86YV0 1011 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 DCAF4Q8WV16 495 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 LPAR1Q92633 364 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 ZSCAN31Q96LW9 406 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-204ENST00000540669 SH2D4AQ9H788 454 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 ARHGEF10LQ9HCE6 1279 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 EMILIN3Q9NT22 766 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 CLIP2Q9UDT6 1046 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 MAD2L2Q9UI95 211 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 CSADQ9Y600 493 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 CNTNAP5Q8WYK1 1306 aa12.34□□□□□ -0.43
VPS33A-204ENST00000540669 TESPA1A2RU30 521 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-204ENST00000540669 FAM155AB1AL88 458 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-204ENST00000540669 F5H6K3 240 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 CXCL11O14625 94 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 IRF6O14896 467 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 ZBTB43O43298 467 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 CALM1P0DP23 149 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 CALM2P0DP24 149 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 CALM3P0DP25 149 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 ZBTB48P10074 688 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-204ENST00000540669 CDC27P30260 824 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 KLRC3Q07444 240 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 GRM1Q13255 1194 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 PRKG1Q13976 671 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 ASPRV1Q53RT3 343 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 TMTC3Q6ZXV5 915 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 SMARCC2Q8TAQ2 1214 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 MTMR8Q96EF0 704 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 WNK4Q96J92 1243 aa12.33□□□□□ -0.44
VPS33A-204ENST00000540669 MS4A4AQ96JQ5 239 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms