RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 IPO7O95373 1038 aaKnown RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 SLC5A1P13866 664 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 SPAG1Q07617 926 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 DPYDQ12882 1025 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 PAK1Q13153 545 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 KCNJ12Q14500 433 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 EARS2Q5JPH6 523 aaKnown RBP12.7□□□□□ -0.38
SYNE1-237ENST00000539504 CCDC122Q5T0U0 273 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 IQUBQ8NA54 791 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 SPATA20Q8TB22 786 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 NELFBQ8WX92 580 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 HINFPQ9BQA5 517 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 ABCF2Q9UG63 623 aa12.7□□□□□ -0.38
SYNE1-237ENST00000539504 NWD2Q9ULI1 1742 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 TCRBV5S4A2TA0A5A2 114 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 RNF225M0QZC1 329 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-237ENST00000539504 RNF40O75150 1001 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 PBX1P40424 430 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 PUM3Q15397 648 aaKnown RBP12.69□□□□□ -0.38
SYNE1-237ENST00000539504 TTC38Q5R3I4 469 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 LPIN2Q92539 896 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 SMARCC1Q92922 1105 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-237ENST00000539504 CRACR2AQ9BSW2 395 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 SRGAP2O75044 1071 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 TUBBP07437 444 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 PTGDRQ13258 359 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 RASGRF1Q13972 1273 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 MAP9Q49MG5 647 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 FERMT2Q96AC1 680 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 TFR2Q9UP52 801 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 TNKSO95271 1327 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 A0A0G2JS52 829 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 STARD3NLO95772 234 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 MCM7P33993 719 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 CTR9Q6PD62 1173 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 AFAP1L1Q8TED9 768 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 SDR42E1Q8WUS8 393 aa12.69□□□□□ -0.38
SYNE1-237ENST00000539504 CT47A1Q5JQC4 288 aaPredicted RBP12.68□□□□□ -0.38
SYNE1-237ENST00000539504 ESR2Q92731 530 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 LUC7L2Q9Y383 392 aaKnown RBP12.68□□□□□ -0.38
SYNE1-237ENST00000539504 SEMA3EO15041 775 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 ARHGAP25P42331 645 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 TRIM28Q13263 835 aaKnown RBP12.68□□□□□ -0.38
SYNE1-237ENST00000539504 CATIPQ7Z7H3 387 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 NLRP10Q86W26 655 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 PLA2G12BQ9BX93 195 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 MED4Q9NPJ6 270 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 MYO1AQ9UBC5 1043 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 TMEM94Q12767 1356 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 RIC1Q4ADV7 1423 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 NDUFA10O95299 355 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 BMP15O95972 392 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 CYP7A1P22680 504 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 EIF5P55010 431 aaKnown RBP12.68□□□□□ -0.38
SYNE1-237ENST00000539504 CERS3Q8IU89 383 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 IPO4Q8TEX9 1081 aaKnown RBP12.68□□□□□ -0.38
SYNE1-237ENST00000539504 STAG1Q8WVM7 1258 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 EEF2KMTQ96G04 330 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 RNF26Q9BY78 433 aaPredicted RBP12.68□□□□□ -0.38
SYNE1-237ENST00000539504 SAR1BQ9Y6B6 198 aa12.68□□□□□ -0.38
SYNE1-237ENST00000539504 PHRF1Q9P1Y6 1649 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 WNT7AO00755 349 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 NLRP5P59047 1200 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 PPARAQ07869 468 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 PDE4CQ08493 712 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 TCP11X2Q5H9J9 407 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 IFIT1BQ5T764 474 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 GIGYF2Q6Y7W6 1299 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 PIK3AP1Q6ZUJ8 805 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 RIN2Q8WYP3 895 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 MKRN1Q9UHC7 482 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 GDAQ9Y2T3 454 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 SCN11AQ9UI33 1791 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 RGPD5Q99666 1765 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 PLEKHA8P1O95397 391 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 ARID4AP29374 1257 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 TRIM14Q14142 442 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 OR8K1Q8NGG5 319 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 JADE2Q9NQC1 790 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 GNL3LQ9NVN8 582 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 MAGEC2Q9UBF1 373 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 ASAP1Q9ULH1 1129 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 EIF3CLB5ME19 914 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 GNAT2P19087 354 aa12.67□□□□□ -0.38
SYNE1-237ENST00000539504 TTC31Q49AM3 519 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 GSPT2Q8IYD1 628 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 ZNF512BQ96KM6 892 aaPredicted RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 EIF3CQ99613 913 aaKnown RBP12.67□□□□□ -0.38
SYNE1-237ENST00000539504 C1orf167Q5SNV9 1468 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 SPEF2Q9C093 1822 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 BCAMP50895 628 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 STIM1Q13586 685 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 MMS19Q96T76 1030 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 RABEP2Q9H5N1 569 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 ZNHIT6Q9NWK9 470 aaKnown RBP12.66□□□□□ -0.38
SYNE1-237ENST00000539504 LIMA1Q9UHB6 759 aaKnown RBP12.66□□□□□ -0.38
SYNE1-237ENST00000539504 ITIH6Q6UXX5 1313 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 TTC26A0AVF1 554 aa12.66□□□□□ -0.38
SYNE1-237ENST00000539504 ATP1A1P05023 1023 aaKnown RBP12.66□□□□□ -0.38
SYNE1-237ENST00000539504 MCM3P25205 808 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms