RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 PPP1R13LQ8WUF5 828 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 MEGF10Q96KG7 1140 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 MYRFLQ96LU7 910 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 FGD4Q96M96 766 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 KREMEN1Q96MU8 473 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 APBA2Q99767 749 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 EPN3Q9H201 632 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 PRDM10Q9NQV6 1147 aa7.83□□□□□ -1.16
PRKDC-208ENST00000536710 TPX2Q9ULW0 747 aaKnown RBP7.83□□□□□ -1.16
PRKDC-208ENST00000536710 HMGB1P09429 215 aaKnown RBP7.82□□□□□ -1.16
PRKDC-208ENST00000536710 ETV3P41162 512 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 RNF4P78317 190 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 PAOXQ6QHF9 649 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 FAM20CQ8IXL6 584 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 LRRC47Q8N1G4 583 aaKnown RBP7.82□□□□□ -1.16
PRKDC-208ENST00000536710 TOP6BLQ8N6T0 577 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 DNAJB8Q8NHS0 232 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 EZH1Q92800 747 aaPredicted RBP7.82□□□□□ -1.16
PRKDC-208ENST00000536710 ZNF669Q96BR6 464 aaPredicted RBP7.82□□□□□ -1.16
PRKDC-208ENST00000536710 SPATA9Q9BWV2 254 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 SLKQ9H2G2 1235 aaPredicted RBP7.82□□□□□ -1.16
PRKDC-208ENST00000536710 SUGT1Q9Y2Z0 365 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 PTCH2Q9Y6C5 1203 aa7.82□□□□□ -1.16
PRKDC-208ENST00000536710 HSP90B1P14625 803 aaKnown RBP7.81□□□□□ -1.16
PRKDC-208ENST00000536710 SQSTM1Q13501 440 aa7.81□□□□□ -1.16
PRKDC-208ENST00000536710 NBPF12Q5TAG4 269 aaPredicted RBP7.81□□□□□ -1.16
PRKDC-208ENST00000536710 ALYREFQ86V81 257 aaKnown RBP7.81□□□□□ -1.16
PRKDC-208ENST00000536710 DZIP1LQ8IYY4 767 aaKnown RBP7.81□□□□□ -1.16
PRKDC-208ENST00000536710 ARMC10Q8N2F6 343 aa7.81□□□□□ -1.16
PRKDC-208ENST00000536710 GBP3Q9H0R5 595 aa7.81□□□□□ -1.16
PRKDC-208ENST00000536710 FBXL21Q9UKT6 434 aa7.81□□□□□ -1.16
PRKDC-208ENST00000536710 KRBA1A5PL33 1030 aa7.8□□□□□ -1.16
PRKDC-208ENST00000536710 PPM1GO15355 546 aaPredicted RBP7.8□□□□□ -1.16
PRKDC-208ENST00000536710 DHX15O43143 795 aaKnown RBP7.8□□□□□ -1.16
PRKDC-208ENST00000536710 ZNF143P52747 638 aaPredicted RBP7.8□□□□□ -1.16
PRKDC-208ENST00000536710 BEND4Q6ZU67 534 aa7.8□□□□□ -1.16
PRKDC-208ENST00000536710 GIMAP7Q8NHV1 300 aa7.8□□□□□ -1.16
PRKDC-208ENST00000536710 TMEM260Q9NX78 707 aa7.8□□□□□ -1.16
PRKDC-208ENST00000536710 CBFA2T2O43439 604 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 PPM1BO75688 479 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 FAM153BP0C7A2 387 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 CYP7A1P22680 504 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 AUHQ13825 339 aaKnown RBP7.79□□□□□ -1.16
PRKDC-208ENST00000536710 NOL9Q5SY16 702 aaKnown RBP7.79□□□□□ -1.16
PRKDC-208ENST00000536710 C7orf61Q8IZ16 206 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 LRRN4CLQ8ND94 238 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 ZSWIM2Q8NEG5 633 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 ADCY4Q8NFM4 1077 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 PSMG3-AS1Q96PY0 264 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 ASPNQ9BXN1 380 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 KLHL25Q9H0H3 589 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 ZNF451Q9Y4E5 1061 aa7.79□□□□□ -1.16
PRKDC-208ENST00000536710 FAM181BA6NEQ2 426 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 FAM87AP0C7U9 286 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 PLEKHG4Q58EX7 1191 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 RNF187Q5TA31 235 aaPredicted RBP7.78□□□□□ -1.16
PRKDC-208ENST00000536710 SEZ6L2Q6UXD5 910 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 C16orf86Q6ZW13 317 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 RNF141Q8WVD5 230 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 IPO9Q96P70 1041 aaKnown RBP7.78□□□□□ -1.16
PRKDC-208ENST00000536710 CDC6Q99741 560 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 C1GALT1Q9NS00 363 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 WHRNQ9P202 907 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 APEX2Q9UBZ4 518 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 SUSD2Q9UGT4 822 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 PCDHB12Q9Y5F1 795 aa7.78□□□□□ -1.16
PRKDC-208ENST00000536710 NOP56O00567 594 aaKnown RBP7.77□□□□□ -1.17
PRKDC-208ENST00000536710 LEFTY1O75610 366 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 ASMTLO95671 621 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 ITGA4P13612 1032 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 CD247P20963 164 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 CHRNA4P43681 627 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 TAF7LQ5H9L4 462 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 ZBTB38Q8NAP3 1195 aaPredicted RBP7.77□□□□□ -1.17
PRKDC-208ENST00000536710 SGSM3Q96HU1 749 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 SLC26A8Q96RN1 970 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 DUSP23Q9BVJ7 150 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 LGR4Q9BXB1 951 aa7.77□□□□□ -1.17
PRKDC-208ENST00000536710 A0A1W2PQU0 124 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 LRRN2O75325 713 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 CBX7O95931 251 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 ITGAVP06756 1048 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 HSP90AA2PQ14568 343 aaPredicted RBP7.76□□□□□ -1.17
PRKDC-208ENST00000536710 TCEA2Q15560 299 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 ANKRD39Q53RE8 183 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 TMEM67Q5HYA8 995 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 CLEC10AQ8IUN9 316 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 JMYQ8N9B5 988 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 BRF1Q92994 677 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 FBXL18Q96ME1 805 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 TBC1D32Q96NH3 1257 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 GP6Q9HCN6 339 aa7.76□□□□□ -1.17
PRKDC-208ENST00000536710 PRDM5Q9NQX1 630 aaPredicted RBP7.76□□□□□ -1.17
PRKDC-208ENST00000536710 TRAV20A0A0B4J274 112 aa7.75□□□□□ -1.17
PRKDC-208ENST00000536710 RNF225M0QZC1 329 aaPredicted RBP7.75□□□□□ -1.17
PRKDC-208ENST00000536710 ADCY3O60266 1144 aa7.75□□□□□ -1.17
PRKDC-208ENST00000536710 EOMESO95936 686 aa7.75□□□□□ -1.17
PRKDC-208ENST00000536710 PPP2R2AP63151 447 aa7.75□□□□□ -1.17
PRKDC-208ENST00000536710 PPP2R5DQ14738 602 aa7.75□□□□□ -1.17
PRKDC-208ENST00000536710 NBPF9Q3BBW0 867 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms