RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TACC3Q9Y6A5 838 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 SGSM2O43147 1006 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 ATP2B2Q01814 1243 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 FBXO46Q6PJ61 603 aaPredicted RBP17.83■□□□□ 0.44
CPSF1-208ENST00000532560 CATSPERGQ6ZRH7 1159 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 STAG1Q8WVM7 1258 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 CEP95Q96GE4 821 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 ABHD8Q96I13 439 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 P2RX7Q99572 595 aaKnown RBP17.83■□□□□ 0.44
CPSF1-208ENST00000532560 NBPF3Q9H094 633 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 GOPCQ9HD26 462 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 MTMR4Q9NYA4 1195 aa17.83■□□□□ 0.44
CPSF1-208ENST00000532560 WDR46O15213 610 aaKnown RBP17.82■□□□□ 0.44
CPSF1-208ENST00000532560 HAND2P61296 217 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 TFAP4Q01664 338 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 FAM47AQ5JRC9 791 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 KIAA1755Q5JYT7 1200 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 PPP4R3BQ5MIZ7 849 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 AKNAD1Q5T1N1 836 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 LBX2Q6XYB7 198 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 TBC1D10CQ8IV04 446 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 RNF41Q9H4P4 317 aaPredicted RBP17.82■□□□□ 0.44
CPSF1-208ENST00000532560 MORF4L1Q9UBU8 362 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 CTNNA3Q9UI47 895 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 MYH4Q9Y623 1939 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 MGAMO43451 1857 aa17.82■□□□□ 0.44
CPSF1-208ENST00000532560 TSPY2A6NKD2 308 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 ZNF213O14771 459 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 TTLL1O95922 423 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 CTGFP29279 349 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 PSMC4P43686 418 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 NT5C2P49902 561 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 FCGRTP55899 365 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 TRIM47Q96LD4 638 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 INCENPQ9NQS7 918 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 PTPN22Q9Y2R2 807 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 A0A0G2JMZ2 1700 aa17.81■□□□□ 0.44
CPSF1-208ENST00000532560 SPDYE16A6NNV3 312 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-208ENST00000532560 RANBP6O60518 1105 aaKnown RBP17.8■□□□□ 0.44
CPSF1-208ENST00000532560 IMMTQ16891 758 aaKnown RBP17.8■□□□□ 0.44
CPSF1-208ENST00000532560 MFSD6Q6ZSS7 791 aa17.8■□□□□ 0.44
CPSF1-208ENST00000532560 SPICE1Q8N0Z3 855 aa17.8■□□□□ 0.44
CPSF1-208ENST00000532560 MKL1Q969V6 931 aa17.8■□□□□ 0.44
CPSF1-208ENST00000532560 TANGO6Q9C0B7 1094 aa17.8■□□□□ 0.44
CPSF1-208ENST00000532560 RLFQ13129 1914 aa17.8■□□□□ 0.44
CPSF1-208ENST00000532560 PARP14Q460N5 1801 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 NEDD4P46934 1319 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 MYPNQ86TC9 1320 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 PRMT2P55345 433 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 POTEEQ6S8J3 1075 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 GMCL1P1Q8NEA9 526 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 TXNRD2Q9NNW7 524 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 IL17RBQ9NRM6 502 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 TOMM22Q9NS69 142 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 CLIP2Q9UDT6 1046 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 HPS5Q9UPZ3 1129 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 RABGAP1Q9Y3P9 1069 aa17.79■□□□□ 0.44
CPSF1-208ENST00000532560 F5H6K3 240 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 FMNL1O95466 1100 aaPredicted RBP17.78■□□□□ 0.44
CPSF1-208ENST00000532560 NOVP48745 357 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 ERVK-9P63128 1117 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 ERVK-24P63145 666 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 PTH1RQ03431 593 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 KLRC3Q07444 240 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 COG2Q14746 738 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 RRP12Q5JTH9 1297 aaKnown RBP17.78■□□□□ 0.44
CPSF1-208ENST00000532560 GPRC5AQ8NFJ5 357 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 TCP11L1Q9NUJ3 509 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 RBPJLQ9UBG7 517 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 SRRDQ9UH36 339 aa17.78■□□□□ 0.44
CPSF1-208ENST00000532560 NMT2O60551 498 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 CNMDO75829 334 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 FLOT1O75955 427 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 NDUFB10O96000 172 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 HOXD10P28358 340 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 LRRC47Q8N1G4 583 aaKnown RBP17.77■□□□□ 0.44
CPSF1-208ENST00000532560 ESR2Q92731 530 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 ESYT1Q9BSJ8 1104 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 PAGR1Q9BTK6 254 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 HOXC10Q9NYD6 342 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 PTCH2Q9Y6C5 1203 aa17.77■□□□□ 0.44
CPSF1-208ENST00000532560 U3KPZ7 1027 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-208ENST00000532560 HTTP42858 3142 aa17.76■□□□□ 0.43
CPSF1-208ENST00000532560 TNPO2O14787 897 aaKnown RBP17.76■□□□□ 0.43
CPSF1-208ENST00000532560 ECM2O94769 699 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-208ENST00000532560 DSG3P32926 999 aa17.76■□□□□ 0.43
CPSF1-208ENST00000532560 FAM83BQ5T0W9 1011 aa17.76■□□□□ 0.43
CPSF1-208ENST00000532560 MB21D1Q8N884 522 aa17.76■□□□□ 0.43
CPSF1-208ENST00000532560 STX8Q9UNK0 236 aa17.76■□□□□ 0.43
CPSF1-208ENST00000532560 RAD21O60216 631 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 PEX10O60683 326 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 CDC45O75419 566 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 PRKCZQ05513 592 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 CASC1Q6TDU7 716 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 MAP4K1Q92918 833 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 COA7Q96BR5 231 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 CNNM2Q9H8M5 875 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 TSHZ2Q9NRE2 1034 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 BTBD7Q9P203 1132 aa17.75■□□□□ 0.43
CPSF1-208ENST00000532560 MAPK4P31152 587 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms