RNA–Protein interactions for RNA: ENST00000531336.1

SMPD1-206, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 2

Gene SMPD1, Length 650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-206ENST00000531336 KIAA1755Q5JYT7 1200 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 RASEFQ8IZ41 740 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 SPICE1Q8N0Z3 855 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 UBAC1Q9BSL1 405 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 USP26Q9BXU7 913 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 ZCCHC17Q9NP64 241 aaKnown RBP16.29■□□□□ 0.2
SMPD1-206ENST00000531336 TCP11L1Q9NUJ3 509 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 SAGE1Q9NXZ1 904 aa16.29■□□□□ 0.2
SMPD1-206ENST00000531336 TNKSO95271 1327 aa16.28■□□□□ 0.2
SMPD1-206ENST00000531336 EPB41L2O43491 1005 aaKnown RBP16.28■□□□□ 0.2
SMPD1-206ENST00000531336 CA12O43570 354 aa16.28■□□□□ 0.2
SMPD1-206ENST00000531336 TBC1D8O95759 1140 aa16.28■□□□□ 0.2
SMPD1-206ENST00000531336 MCCP23508 829 aa16.28■□□□□ 0.2
SMPD1-206ENST00000531336 PABPC4Q13310 644 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMPD1-206ENST00000531336 CRHR2Q13324 411 aa16.28■□□□□ 0.2
SMPD1-206ENST00000531336 MB21D2Q8IYB1 491 aaPredicted RBP16.28■□□□□ 0.2
SMPD1-206ENST00000531336 ZSCAN10Q96SZ4 725 aaPredicted RBP16.28■□□□□ 0.2
SMPD1-206ENST00000531336 PARK7Q99497 189 aaKnown RBP16.28■□□□□ 0.2
SMPD1-206ENST00000531336 RPAP3Q9H6T3 665 aaPredicted RBP16.28■□□□□ 0.2
SMPD1-206ENST00000531336 MTMR7Q9Y216 660 aa16.28■□□□□ 0.2
SMPD1-206ENST00000531336 PCNTO95613 3336 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 FOXN1O15353 648 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 EIF5BO60841 1220 aaKnown RBP16.27■□□□□ 0.2
SMPD1-206ENST00000531336 SEC24BO95487 1268 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 NDUFB10O96000 172 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 CYP2C8P10632 490 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 IRX3P78415 501 aaPredicted RBP16.27■□□□□ 0.2
SMPD1-206ENST00000531336 KRT32Q14532 448 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 CHST3Q7LGC8 479 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 LPAR1Q92633 364 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 CHMP4CQ96CF2 233 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 TANGO6Q9C0B7 1094 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 ZFYVE28Q9HCC9 887 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 PNMA3Q9UL41 463 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 SLC45A1Q9Y2W3 748 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 SNX14Q9Y5W7 946 aa16.27■□□□□ 0.2
SMPD1-206ENST00000531336 RLFQ13129 1914 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 WDR46O15213 610 aaKnown RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 TOP1P11387 765 aaKnown RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 OSBPP22059 807 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 NOVP48745 357 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 ANTXR2P58335 489 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 COL9A3Q14050 684 aaPredicted RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 ADCK5Q3MIX3 580 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 CCDC178Q5BJE1 867 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 RCSD1Q6JBY9 416 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 RASGRP2Q7LDG7 609 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 ENAHQ8N8S7 591 aaPredicted RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 KCNB2Q92953 911 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 MKL1Q969V6 931 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 NUP88Q99567 741 aaPredicted RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 TMEM47Q9BQJ4 181 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 ASCC2Q9H1I8 757 aaPredicted RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 R3HDMLQ9H3Y0 253 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 ISY1Q9ULR0 285 aaKnown RBP16.26■□□□□ 0.19
SMPD1-206ENST00000531336 SYNPO2Q9UMS6 1093 aa16.26■□□□□ 0.19
SMPD1-206ENST00000531336 COL11A1P12107 1806 aaPredicted RBP16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L15C9J2P7 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L13C9JLJ4 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L11C9JVI0 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L18D6R9N7 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L22D6RA61 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L17D6RBQ6 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L19D6RCP7 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L20D6RJB6 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 F5H6K3 240 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 IFIT3O14879 490 aaKnown RBP16.25■□□□□ 0.19
SMPD1-206ENST00000531336 PRC1O43663 620 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 HOXA7P31268 230 aaPredicted RBP16.25■□□□□ 0.19
SMPD1-206ENST00000531336 KLRC3Q07444 240 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 USP17L24Q0WX57 530 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 TSGA10IPQ3SY00 556 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 FAM83BQ5T0W9 1011 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 SLFN13Q68D06 897 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 SAMD1Q6SPF0 538 aaPredicted RBP16.25■□□□□ 0.19
SMPD1-206ENST00000531336 GMCL1P1Q8NEA9 526 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 SMCR8Q8TEV9 937 aaPredicted RBP16.25■□□□□ 0.19
SMPD1-206ENST00000531336 JAKMIP1Q96N16 626 aaKnown RBP16.25■□□□□ 0.19
SMPD1-206ENST00000531336 TTC14Q96N46 770 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 NEK1Q96PY6 1258 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 A0A0G2JMZ2 1700 aa16.25■□□□□ 0.19
SMPD1-206ENST00000531336 ERICH2A1L162 156 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 HSPA8P11142 646 aaKnown RBP16.24■□□□□ 0.19
SMPD1-206ENST00000531336 MCM5P33992 734 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 SART3Q15020 963 aaKnown RBP16.24■□□□□ 0.19
SMPD1-206ENST00000531336 SEC23AQ15436 765 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 TMEM67Q5HYA8 995 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 IFIT1BQ5T764 474 aaKnown RBP16.24■□□□□ 0.19
SMPD1-206ENST00000531336 CATSPERGQ6ZRH7 1159 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 DGKHQ86XP1 1220 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 CFHR5Q9BXR6 569 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 KAT14Q9H8E8 782 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 CPA4Q9UI42 421 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 ZSWIM8A7E2V4 1837 aa16.24■□□□□ 0.19
SMPD1-206ENST00000531336 ADGRA2Q96PE1 1338 aa16.23■□□□□ 0.19
SMPD1-206ENST00000531336 CTCFP49711 727 aaPredicted RBP16.23■□□□□ 0.19
SMPD1-206ENST00000531336 WTAPQ15007 396 aa16.23■□□□□ 0.19
SMPD1-206ENST00000531336 CCDC96Q2M329 555 aa16.23■□□□□ 0.19
SMPD1-206ENST00000531336 TCEANC2Q96MN5 208 aa16.23■□□□□ 0.19
SMPD1-206ENST00000531336 LRRC2Q9BYS8 371 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms