RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	SCO2	A0A1W2PP80	73 aa		7.63	□□□□□ -1.19
CD44-231	ENST00000531110	HRASLS5	Q96KN8	279 aa		7.63	□□□□□ -1.19
CD44-231	ENST00000531110	ANTXR1	Q9H6X2	564 aa		7.63	□□□□□ -1.19
CD44-231	ENST00000531110	CCDC39	Q9UFE4	941 aa		7.63	□□□□□ -1.19
CD44-231	ENST00000531110	ST14	Q9Y5Y6	855 aa		7.63	□□□□□ -1.19
CD44-231	ENST00000531110	CNTNAP4	Q9C0A0	1308 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	FGR	P09769	529 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	ACR	P10323	421 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	CASP7	P55210	303 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	CHMP4BP1	P59074	171 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	BCL7C	Q8WUZ0	217 aa	Predicted RBP	7.62	□□□□□ -1.19
CD44-231	ENST00000531110	ASB11	Q8WXH4	323 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	SMARCC1	Q92922	1105 aa	Predicted RBP	7.62	□□□□□ -1.19
CD44-231	ENST00000531110	YTHDC1	Q96MU7	727 aa	Known RBP	7.62	□□□□□ -1.19
CD44-231	ENST00000531110	SLC9A7	Q96T83	725 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	GPR62	Q9BZJ7	368 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	SLC5A6	Q9Y289	635 aa		7.62	□□□□□ -1.19
CD44-231	ENST00000531110	PITPNM2	Q9BZ72	1349 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	FAM155A	B1AL88	458 aa	Predicted RBP	7.61	□□□□□ -1.19
CD44-231	ENST00000531110	CLEC3A	O75596	197 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	WNT11	O96014	354 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	SRF	P11831	508 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	ITIH2	P19823	946 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	TNK2	Q07912	1038 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	FBXW10	Q5XX13	1052 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	DTWD2	Q8NBA8	298 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	CPLX3	Q8WVH0	158 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110		Q96M66	194 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	PRR13	Q9NZ81	148 aa		7.61	□□□□□ -1.19
CD44-231	ENST00000531110	ANGEL1	Q9UNK9	670 aa	Known RBP	7.61	□□□□□ -1.19
CD44-231	ENST00000531110	PRR33	A8MZF0	331 aa		7.6	□□□□□ -1.19
CD44-231	ENST00000531110	BBS9	Q3SYG4	887 aa		7.6	□□□□□ -1.19
CD44-231	ENST00000531110	NBPF12	Q5TAG4	269 aa	Predicted RBP	7.6	□□□□□ -1.19
CD44-231	ENST00000531110	CCDC81	Q6ZN84	652 aa		7.6	□□□□□ -1.19
CD44-231	ENST00000531110		Q8N3U1	123 aa		7.6	□□□□□ -1.19
CD44-231	ENST00000531110	AGBL5	Q8NDL9	886 aa		7.6	□□□□□ -1.19
CD44-231	ENST00000531110	TRIT1	Q9H3H1	467 aa	Known RBP	7.6	□□□□□ -1.19
CD44-231	ENST00000531110	SUCO	Q9UBS9	1254 aa	Known RBP	7.6	□□□□□ -1.19
CD44-231	ENST00000531110	FANCI	Q9NVI1	1328 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	CBX7	O95931	251 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	POLR2B	P30876	1174 aa	Known RBP	7.59	□□□□□ -1.19
CD44-231	ENST00000531110	PMS1	P54277	932 aa	Known RBP	7.59	□□□□□ -1.19
CD44-231	ENST00000531110	NAALADL2	Q58DX5	795 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	TNNI3K	Q59H18	835 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	TMPRSS7	Q7RTY8	843 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	ENOX1	Q8TC92	643 aa	Known RBP	7.59	□□□□□ -1.19
CD44-231	ENST00000531110	SLC6A18	Q96N87	628 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	7.59	□□□□□ -1.19
CD44-231	ENST00000531110	PHAX	Q9H814	394 aa	Known RBP	7.59	□□□□□ -1.19
CD44-231	ENST00000531110	SEMA3G	Q9NS98	782 aa		7.59	□□□□□ -1.19
CD44-231	ENST00000531110	SSB	P05455	408 aa	Known RBP eCLIP	7.58	□□□□□ -1.2
CD44-231	ENST00000531110	AOC3	Q16853	763 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	UNC5A	Q6ZN44	842 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	NFXL1	Q6ZNB6	911 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	MCF2L2	Q86YR7	1114 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	WFDC3	Q8IUB2	231 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	TMEM192	Q8IY95	271 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	LMCD1	Q9NZU5	365 aa		7.58	□□□□□ -1.2
CD44-231	ENST00000531110	NBPF9	Q3BBW0	867 aa		7.57	□□□□□ -1.2
CD44-231	ENST00000531110	ANKRD39	Q53RE8	183 aa		7.57	□□□□□ -1.2
CD44-231	ENST00000531110	TTC6	Q86TZ1	520 aa		7.57	□□□□□ -1.2
CD44-231	ENST00000531110	ARMC5	Q96C12	935 aa		7.57	□□□□□ -1.2
CD44-231	ENST00000531110	HSPA12B	Q96MM6	686 aa		7.57	□□□□□ -1.2
CD44-231	ENST00000531110	PAK6	Q9NQU5	681 aa	Predicted RBP	7.57	□□□□□ -1.2
CD44-231	ENST00000531110	GPATCH2	Q9NW75	528 aa		7.57	□□□□□ -1.2
CD44-231	ENST00000531110	ZNF214	Q9UL59	606 aa	Predicted RBP	7.57	□□□□□ -1.2
CD44-231	ENST00000531110		A0A1W2PQH9	124 aa		7.56	□□□□□ -1.2
CD44-231	ENST00000531110	CDK11B	P21127	795 aa	Known RBP	7.56	□□□□□ -1.2
CD44-231	ENST00000531110	ANGEL2	Q5VTE6	544 aa	Known RBP	7.56	□□□□□ -1.2
CD44-231	ENST00000531110	RUFY4	Q6ZNE9	571 aa		7.56	□□□□□ -1.2
CD44-231	ENST00000531110	FLCN	Q8NFG4	579 aa		7.56	□□□□□ -1.2
CD44-231	ENST00000531110	DUSP15	Q9H1R2	295 aa	Predicted RBP	7.56	□□□□□ -1.2
CD44-231	ENST00000531110	PRKAG3	Q9UGI9	489 aa		7.56	□□□□□ -1.2
CD44-231	ENST00000531110	DNAJA1	P31689	397 aa	Known RBP	7.55	□□□□□ -1.2
CD44-231	ENST00000531110	GAB4	Q2WGN9	574 aa		7.55	□□□□□ -1.2
CD44-231	ENST00000531110	TSPYL5	Q86VY4	417 aa	Predicted RBP	7.55	□□□□□ -1.2
CD44-231	ENST00000531110	SYTL5	Q8TDW5	730 aa	Predicted RBP	7.55	□□□□□ -1.2
CD44-231	ENST00000531110	ADAMTS4	O75173	837 aa		7.54	□□□□□ -1.2
CD44-231	ENST00000531110	FUT4	P22083	530 aa		7.54	□□□□□ -1.2
CD44-231	ENST00000531110	GP2	P55259	537 aa	Known RBP	7.54	□□□□□ -1.2
CD44-231	ENST00000531110	ZYX	Q15942	572 aa	Known RBP	7.54	□□□□□ -1.2
CD44-231	ENST00000531110	CDKAL1	Q5VV42	579 aa		7.54	□□□□□ -1.2
CD44-231	ENST00000531110	SPRED2	Q7Z698	418 aa		7.54	□□□□□ -1.2
CD44-231	ENST00000531110	NBPF11	Q86T75	865 aa		7.54	□□□□□ -1.2
CD44-231	ENST00000531110	FAM169B	Q8N8A8	192 aa		7.54	□□□□□ -1.2
CD44-231	ENST00000531110	ASCC2	Q9H1I8	757 aa	Predicted RBP	7.54	□□□□□ -1.2
CD44-231	ENST00000531110		H3BS24	57 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	CD8B	P10966	210 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	NMI	Q13287	307 aa	Predicted RBP	7.53	□□□□□ -1.2
CD44-231	ENST00000531110	AUH	Q13825	339 aa	Known RBP	7.53	□□□□□ -1.2
CD44-231	ENST00000531110	SF3A1	Q15459	793 aa	Known RBP	7.53	□□□□□ -1.2
CD44-231	ENST00000531110	C7orf61	Q8IZ16	206 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	DAGLB	Q8NCG7	672 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	ANAPC16	Q96DE5	110 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	CHMP4A	Q9BY43	222 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	MKRN2	Q9H000	416 aa	Known RBP	7.53	□□□□□ -1.2
CD44-231	ENST00000531110	PCDHB12	Q9Y5F1	795 aa		7.53	□□□□□ -1.2
CD44-231	ENST00000531110	LTBP3	Q9NS15	1303 aa		7.52	□□□□□ -1.2
CD44-231	ENST00000531110	SIGLEC6	O43699	453 aa		7.52	□□□□□ -1.21
CD44-231	ENST00000531110	LRRN2	O75325	713 aa		7.52	□□□□□ -1.21

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