RNA–Protein interactions for RNA: ENST00000521646.1

CSMD1-210, Transcript of CUB and Sushi multiple domains 1, human

TSL 5

Gene CSMD1, Length 1,003 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-210	ENST00000521646	VCAN	P13611	3396 aa		13.66	□□□□□ -0.22
CSMD1-210	ENST00000521646	PFAS	O15067	1338 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	GDF11	O95390	407 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	TFRC	P02786	760 aa	Known RBP	13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	DYNLL1	P63167	89 aa	Known RBP	13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	METTL16	Q86W50	562 aa	Known RBP	13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	MAPKAPK5	Q8IW41	473 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	TEX11	Q8IYF3	940 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	TMEM57	Q8N5G2	664 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	P2RX7	Q99572	595 aa	Known RBP	13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	C1orf115	Q9H7X2	142 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	RAI14	Q9P0K7	980 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	PALD1	Q9ULE6	856 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	AKAP2	Q9Y2D5	859 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	CDH23	Q9H251	3354 aa		13.65	□□□□□ -0.22
CSMD1-210	ENST00000521646	FLT1	P17948	1338 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	COPS2	P61201	443 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	CCL14	Q16627	93 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	MAP3K21	Q5TCX8	1036 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	TGFBRAP1	Q8WUH2	860 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	GDF15	Q99988	308 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	HTATIP2	Q9BUP3	242 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	PORCN	Q9H237	461 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	RBPJL	Q9UBG7	517 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	MORF4L1	Q9UBU8	362 aa		13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.64	□□□□□ -0.23
CSMD1-210	ENST00000521646	FRMPD3	Q5JV73	1810 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	USP17L5	A8MUK1	530 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	CNMD	O75829	334 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	GNAI3	P08754	354 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	RLBP1	P12271	317 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	SYN1	P17600	705 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	ZAP70	P43403	619 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	TNNI3K	Q59H18	835 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	ZNF516	Q92618	1163 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	USP6NL	Q92738	828 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	WDR18	Q9BV38	432 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	SAP30BP	Q9UHR5	308 aa	Known RBP	13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	DBNL	Q9UJU6	430 aa	Known RBP	13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	FPGT-TNNI3K	V9GXZ4	949 aa		13.63	□□□□□ -0.23
CSMD1-210	ENST00000521646	PRUNE2	Q8WUY3	3088 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	HMGCR	P04035	888 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	GNAI2	P04899	355 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	CYP2B6	P20813	491 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	BACE1	P56817	501 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	KMT5B	Q4FZB7	885 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	ATF7IP	Q6VMQ6	1270 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646		Q7L0L9	218 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	C7orf61	Q8IZ16	206 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	COA7	Q96BR5	231 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	ANTXR1	Q9H6X2	564 aa		13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.62	□□□□□ -0.23
CSMD1-210	ENST00000521646	CCND3	P30281	292 aa	Predicted RBP	13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	HOXA7	P31268	230 aa	Predicted RBP	13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	HERVK_113	P62684	666 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	NAA16	Q6N069	864 aa	Predicted RBP	13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	SSH3	Q8TE77	659 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	FRAT1	Q92837	279 aa	Predicted RBP	13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	FLRT1	Q9NZU1	646 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	LRP2BP	Q9P2M1	347 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	HERC5	Q9UII4	1024 aa	Known RBP	13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	OGDHL	Q9ULD0	1010 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	ZBTB21	Q9ULJ3	1066 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	PCDHB3	Q9Y5E6	796 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	NR2E3	Q9Y5X4	410 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	CUL9	Q8IWT3	2517 aa		13.61	□□□□□ -0.23
CSMD1-210	ENST00000521646	MYH1	P12882	1939 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	RGS20	O76081	388 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	GCLC	P48506	637 aa	Predicted RBP	13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	GSTO1	P78417	241 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	CACNB2	Q08289	660 aa	Predicted RBP	13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	MORN1	Q5T089	497 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	NLRP7	Q8WX94	980 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	EAF2	Q96CJ1	260 aa	Predicted RBP	13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	PI4KB	Q9UBF8	816 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	RPTOR	Q8N122	1335 aa		13.6	□□□□□ -0.23
CSMD1-210	ENST00000521646	RLF	Q13129	1914 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	SMIM22	K7EJ46	135 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	LDHC	P07864	332 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	CFH	P08603	1231 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	COL6A1	P12109	1028 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	GUCY1A2	P33402	732 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	MAGEA10	P43363	369 aa	Predicted RBP	13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	GORAB	Q5T7V8	394 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	NECAB2	Q7Z6G3	386 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	MIGA1	Q8NAN2	632 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	ACER1	Q8TDN7	264 aa		13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	DAXX	Q9UER7	740 aa	Predicted RBP	13.59	□□□□□ -0.23
CSMD1-210	ENST00000521646	MAP4K4	O95819	1239 aa	Predicted RBP	13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	GH2	P01242	217 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	IGHA2	P01877	340 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	UQCRFS1P1	P0C7P4	283 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	ERVK-9	P63128	1117 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	ERVK-24	P63145	666 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	ATP8B2	P98198	1209 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	LRRC26	Q2I0M4	334 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms