RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 BTBD19C9JJ37 291 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 USP17L10C9JJH3 530 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 CXCL11O14625 94 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 PCP11498 1178 aaKnown RBP11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 CETPP11597 493 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 BACE1P56817 501 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 SREBF2Q12772 1141 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 TRDNQ13061 729 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 RNF20Q5VTR2 975 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 GPAT2Q6NUI2 795 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 MB21D2Q8IYB1 491 aaPredicted RBP11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 NCOA7Q8NI08 942 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 NUP88Q99567 741 aaPredicted RBP11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 LRRC2Q9BYS8 371 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 KRT23Q9C075 422 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 CNNM2Q9H8M5 875 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 KANSL2Q9H9L4 492 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 ARHGEF10LQ9HCE6 1279 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 GPHNQ9NQX3 736 aaPredicted RBP11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 CLIP2Q9UDT6 1046 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 TNKSO95271 1327 aa11.56□□□□□ -0.56
TOPBP1-209ENST00000513818 TESPA1A2RU30 521 aaPredicted RBP11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 VCAM1P19320 739 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 MAP2K2P36507 400 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 USP17L2Q6R6M4 530 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 IFNL1Q8IU54 200 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 JAKMIP1Q96N16 626 aaKnown RBP11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 KIAA1683Q9H0B3 1180 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 SENP2Q9HC62 589 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 TMOD4Q9NZQ9 345 aa11.55□□□□□ -0.56
TOPBP1-209ENST00000513818 PDHXO00330 501 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 PRC1O43663 620 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 TTLL1O95922 423 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 NDUFB10O96000 172 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 CYP2C8P10632 490 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 SH3D19Q5HYK7 790 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 RCSD1Q6JBY9 416 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 ENAHQ8N8S7 591 aaPredicted RBP11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 NEK1Q96PY6 1258 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 ZSCAN10Q96SZ4 725 aaPredicted RBP11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 UBAC1Q9BSL1 405 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 TBC1D2Q9BYX2 928 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 R3HDMLQ9H3Y0 253 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 VCPKMTQ9H867 229 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 NYAP2Q9P242 653 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 ISY1Q9ULR0 285 aaKnown RBP11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 AGTPBP1Q9UPW5 1226 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 TMX2Q9Y320 296 aa11.54□□□□□ -0.56
TOPBP1-209ENST00000513818 ZSWIM8A7E2V4 1837 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 PARP14Q460N5 1801 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 PEX10O60683 326 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 TRPA1O75762 1119 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 PRR29P0C7W0 189 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 HSPA1AP0DMV8 641 aaKnown RBP11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 HSPA1BP0DMV9 641 aaKnown RBP11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 ZKSCAN1P17029 563 aaPredicted RBP11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 MCCP23508 829 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 TM4SF4P48230 202 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 CRHR2Q13324 411 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 TAF1CQ15572 869 aaPredicted RBP11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 FAM83BQ5T0W9 1011 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 IQCA1Q86XH1 822 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 RAB11FIP4Q86YS3 637 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 JMYQ8N9B5 988 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 KCNB2Q92953 911 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 C12orf42Q96LP6 360 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 TMEM47Q9BQJ4 181 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 TANGO6Q9C0B7 1094 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 RPAP3Q9H6T3 665 aaPredicted RBP11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 SH2D4AQ9H788 454 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 RNF186Q9NXI6 227 aa11.53□□□□□ -0.56
TOPBP1-209ENST00000513818 C19orf81C9J6K1 198 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 F5H6K3 240 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 IFIT3O14879 490 aaKnown RBP11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 TBC1D8O95759 1140 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 CASTP20810 708 aaKnown RBP11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 NOVP48745 357 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 USP14P54578 494 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 KLRC3Q07444 240 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 SEC23AQ15436 765 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 TMEM67Q5HYA8 995 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 SLFN13Q68D06 897 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 FASTKD5Q7L8L6 764 aaKnown RBP11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 ANKRD23Q86SG2 305 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 PROCA1Q8NCQ7 364 aaPredicted RBP11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 UPF3BQ9BZI7 483 aaKnown RBP11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 GOPCQ9HD26 462 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 TCP11L1Q9NUJ3 509 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 FBXO28Q9NVF7 368 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 FRMPD2Q68DX3 1309 aaPredicted RBP11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 A0A0G2JMZ2 1700 aa11.52□□□□□ -0.57
TOPBP1-209ENST00000513818 RLFQ13129 1914 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 SH2B2O14492 632 aaPredicted RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 TOP1P11387 765 aaKnown RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 PRKAR2AP13861 404 aaKnown RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 MCM5P33992 734 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 MAP2K1Q02750 393 aaPredicted RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 KRT32Q14532 448 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 WTAPQ15007 396 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 CCDC96Q2M329 555 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms