RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 IFT88Q13099 833 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 TAF12Q16514 161 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 GNPTABQ3T906 1256 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 LMBR1LQ6UX01 489 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 USP37Q86T82 979 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC117Q8IWD4 279 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 HOMER3Q9NSC5 361 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 MAPK8IP1Q9UQF2 711 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 MCM7P33993 719 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 BRAPQ7Z569 592 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 ST13P4Q8IZP2 240 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 CCHCR1Q8TD31 782 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 EXOC4Q96A65 974 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 ANLNQ9NQW6 1124 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 SLC4A4Q9Y6R1 1079 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 FAM169AQ9Y6X4 670 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 I3L4J1 428 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 TBC1D8BQ0IIM8 1120 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC93Q567U6 631 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 KIAA2013Q8IYS2 634 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 IQUBQ8NA54 791 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 HAUS8Q9BT25 410 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 ACTR5Q9H9F9 607 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 PFDN4Q9NQP4 134 aa9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 NOP53Q9NZM5 478 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-218ENST00000513024 NOS1P29475 1434 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 GAS8O95995 478 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 GPIHBP1Q8IV16 184 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 TRIM31Q9BZY9 425 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 CLSTN2Q9H4D0 955 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 TSC22D4Q9Y3Q8 395 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 VAMP4O75379 141 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 EEF1DP29692 281 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 STX2P32856 288 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 BLVRAP53004 296 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 NOP14P78316 857 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 TNFAIP1Q13829 316 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC14Q49A88 953 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 TADA2BQ86TJ2 420 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 NLRP7Q8WX94 980 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 FBXO2Q9UK22 296 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 ZNF215Q9UL58 517 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 UTP11Q9Y3A2 253 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 PCDH11XQ9BZA7 1347 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 PCDH11YQ9BZA8 1340 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 GRM8O00222 908 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 CYP7A1P22680 504 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 RAPGEF1Q13905 1077 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 CAPRIN2Q6IMN6 1127 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 ZNF513Q8N8E2 541 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 SPZ1Q9BXG8 430 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 CNNM2Q9H8M5 875 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 ZMYM3Q14202 1370 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 GRIN3BO60391 1043 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 FLOT1O75955 427 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 LRMPQ12912 555 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 FAM98CQ17RN3 349 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 ERMNQ8TAM6 284 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 CERKQ8TCT0 537 aa9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 DCPSQ96C86 337 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-218ENST00000513024 PALM3A6NDB9 673 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT75O95678 551 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 ATP2B3Q16720 1220 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 PDZD8Q8NEN9 1154 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 MRRFQ96E11 262 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 PAG1Q9NWQ8 432 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 PLXNC1O60486 1568 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 VWA3AA6NCI4 1184 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 NAPAP54920 295 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 COPS6Q7L5N1 327 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 ZFYVE16Q7Z3T8 1539 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 EFCAB8A8MWE9 144 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 ARHGAP6O43182 974 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 ZRANB2O95218 330 aaKnown RBP eCLIP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 UQCRFS1P1P0C7P4 283 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 PHBP35232 272 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 TMED10P49755 219 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 IRX5P78411 483 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC125Q86Z20 511 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 NME8Q8N427 588 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 XAGE3Q8WTP9 111 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 CNKSR1Q969H4 720 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 KIF2CQ99661 725 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 NIP7Q9Y221 180 aaKnown RBP eCLIP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 CSADQ9Y600 493 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 ATP1A2P50993 1020 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 UAP1Q16222 522 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 GAS2L3Q86XJ1 694 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 ARHGAP18Q8N392 663 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 LEO1Q8WVC0 666 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 RILPQ96NA2 401 aa9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 UTP6Q9NYH9 597 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-218ENST00000513024 TSPY3P0CV98 308 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 TSPY8P0CW00 308 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT79Q5XKE5 535 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT27Q7Z3Y8 459 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 NLGN1Q8N2Q7 840 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC197Q8NCU1 140 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 KLHL29Q96CT2 875 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms