RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 RPS6KB1P23443 525 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 POLGP54098 1239 aaPredicted RBP4.73□□□□□ -1.65
VCAN-209ENST00000513016 HERC4Q5GLZ8 1057 aaPredicted RBP4.73□□□□□ -1.65
VCAN-209ENST00000513016 PODNQ7Z5L7 613 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 SYNE4Q8N205 404 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 MAIP1Q8WWC4 291 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 BCCIPQ9P287 314 aaKnown RBP eCLIP4.73□□□□□ -1.65
VCAN-209ENST00000513016 LARSQ9P2J5 1176 aaKnown RBP4.73□□□□□ -1.65
VCAN-209ENST00000513016 USP19O94966 1318 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 ELP1O95163 1332 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 AATKQ6ZMQ8 1374 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 VWA3AA6NCI4 1184 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 ZNF233A6NK53 670 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 TMEM232C9JQI7 657 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 CHMLP26374 656 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 TRIM14Q14142 442 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 INF2Q27J81 1249 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 CABP7Q86V35 215 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 CEP112Q8N8E3 955 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 PROCA1Q8NCQ7 364 aaPredicted RBP4.73□□□□□ -1.65
VCAN-209ENST00000513016 GIMAP8Q8ND71 665 aaPredicted RBP4.73□□□□□ -1.65
VCAN-209ENST00000513016 GTF3C2Q8WUA4 911 aaPredicted RBP4.73□□□□□ -1.65
VCAN-209ENST00000513016 TSGA10Q9BZW7 698 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 SLC12A6Q9UHW9 1150 aa4.73□□□□□ -1.65
VCAN-209ENST00000513016 CUTAO60888 179 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 PDE8BO95263 885 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 ERCC5P28715 1186 aaPredicted RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 UBE3CQ15386 1083 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 VPS72Q15906 364 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 AOC3Q16853 763 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 MUM1L1Q5H9M0 696 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 AFAP1L2Q8N4X5 818 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 NUP58Q9BVL2 599 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 ANO3Q9BYT9 981 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 FTOQ9C0B1 505 aaKnown RBP eCLIP4.72□□□□□ -1.65
VCAN-209ENST00000513016 MTRF1LQ9UGC7 380 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 MAGI3Q5TCQ9 1506 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 PRDM1O75626 825 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 RAPGEF1Q13905 1077 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 MICAL1Q8TDZ2 1067 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 IQCDQ96DY2 449 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 WDR11Q9BZH6 1224 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 FAM102BQ5T8I3 360 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 G2E3Q7L622 706 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 TPH2Q8IWU9 490 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 CACTINQ8WUQ7 758 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 PCDHA1Q9Y5I3 950 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 M0R2C6 588 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 BMP3P12645 472 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 TNNI1P19237 187 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 KRT24Q2M2I5 525 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 ELMOD1Q8N336 334 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 A2ML1A8K2U0 1454 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 ERVK-7P63135 1459 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 HMGB1P1B2RPK0 211 aaPredicted RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 CAPN9O14815 690 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 TTLL1O95922 423 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 EN1Q05925 392 aaPredicted RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 MAP7D1Q3KQU3 841 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 DCUN1D2Q6PH85 259 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 RAET1EQ8TD07 263 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 DDX23Q9BUQ8 820 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 PZPP20742 1482 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 KIF28PB7ZC32 967 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 GMNNO75496 209 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 F13A1P00488 732 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 KRT9P35527 623 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 USP17L2Q6R6M4 530 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 DIS3L2Q8IYB7 885 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 FNBP4Q8N3X1 1017 aaPredicted RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 GPR161Q8N6U8 529 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 CCDC63Q8NA47 563 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 TBC1D31Q96DN5 1066 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 INTS4Q96HW7 963 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 FAM81BQ96LP2 452 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 CEP63Q96MT8 703 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 NUCKS1Q9H1E3 243 aaKnown RBP4.72□□□□□ -1.65
VCAN-209ENST00000513016 HACL1Q9UJ83 578 aa4.72□□□□□ -1.65
VCAN-209ENST00000513016 CRCPO75575 148 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 ABL1P00519 1130 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 TMEM191BP0C7N4 346 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 CTDSPL2Q05D32 466 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 SKIV2LQ15477 1246 aaKnown RBP4.71□□□□□ -1.65
VCAN-209ENST00000513016 SURF1Q15526 300 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 ASIC2Q16515 512 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 PNMA8AQ86V59 439 aaPredicted RBP4.71□□□□□ -1.65
VCAN-209ENST00000513016 ZSCAN10Q96SZ4 725 aaPredicted RBP4.71□□□□□ -1.65
VCAN-209ENST00000513016 MRPL44Q9H9J2 332 aaKnown RBP4.71□□□□□ -1.65
VCAN-209ENST00000513016 AKT3Q9Y243 479 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 LUC7L2Q9Y383 392 aaKnown RBP4.71□□□□□ -1.65
VCAN-209ENST00000513016 IGSF3O75054 1194 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 GCNT3O95395 438 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 UBXN1Q04323 297 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 SREBF2Q12772 1141 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 ISM2Q6H9L7 571 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 IFNL3Q8IZI9 196 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 PNMA1Q8ND90 353 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 LEO1Q8WVC0 666 aaPredicted RBP4.71□□□□□ -1.65
VCAN-209ENST00000513016 TCEANC2Q96MN5 208 aa4.71□□□□□ -1.65
VCAN-209ENST00000513016 TTC14Q96N46 770 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms