RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 USP17L12C9JPN9 530 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 USP17L21D6R901 530 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 KRT9P35527 623 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 PBX1P40424 430 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 LMAN1P49257 510 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 NLRP5P59047 1200 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 ERVK-24P63145 666 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 FUT2Q10981 343 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 PDE11AQ9HCR9 933 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 MTMR7Q9Y216 660 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 GDAQ9Y2T3 454 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 XDHP47989 1333 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 CTAGE9A4FU28 777 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 IQCA1Q86XH1 822 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 PLIN2Q99541 437 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 CHP1Q99653 195 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 MTRQ99707 1265 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 ANKZF1Q9H8Y5 726 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 BRMS1Q9HCU9 246 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 TFR2Q9UP52 801 aa10.48□□□□□ -0.73
LIMCH1-215ENST00000512632 ADAMTSL3P82987 1691 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 PHACTR2O75167 634 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 MAPK8IP2Q13387 824 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 CNGA4Q8IV77 575 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 ZFP91Q96JP5 570 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 CTAGE1Q96RT6 745 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 UBXN6Q9BZV1 441 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 ADAM21Q9UKJ8 722 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 PRPF3O43395 683 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 IL6STP40189 918 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 TROAPQ12815 778 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 RASGRP2Q7LDG7 609 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 IQUBQ8NA54 791 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 FERMT2Q96AC1 680 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 ABCB6Q9NP58 842 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 TRIM10Q9UDY6 481 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 NIP7Q9Y221 180 aaKnown RBP eCLIP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 ERVV-1B6SEH8 477 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 IRX5P78411 483 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 GPS2Q13227 327 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 CCDC152Q4G0S7 254 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 SRBD1Q8N5C6 995 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 GUCA1BQ9UMX6 200 aa10.47□□□□□ -0.73
LIMCH1-215ENST00000512632 N4BP1O75113 896 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 CEP112Q8N8E3 955 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 RASSF8Q8NHQ8 419 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 VPS18Q9P253 973 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 COPB1P53618 953 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 NPY5RQ15761 445 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 RASGRP4Q8TDF6 673 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 NELFBQ8WX92 580 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 NAA15Q9BXJ9 866 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 JAG2Q9Y219 1238 aa10.46□□□□□ -0.73
LIMCH1-215ENST00000512632 FAM193AP78312 1265 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 BRD3Q15059 726 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 NCAPH2Q6IBW4 605 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 NOA1Q8NC60 698 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 ACSBG1Q96GR2 724 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 RTL9Q8NET4 1388 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 TRIM49BA6NDI0 452 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 ENC1O14682 589 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 VSNL1P62760 191 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 UBXN1Q04323 297 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 IL17AQ16552 155 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 BEND6Q5SZJ8 279 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 TMTC1Q8IUR5 882 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 CTCFLQ8NI51 663 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 ABHD10Q9NUJ1 306 aa10.46□□□□□ -0.74
LIMCH1-215ENST00000512632 RIOK1Q9BRS2 568 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 KCNJ18B7U540 433 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 EXOC5O00471 708 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 PAK1Q13153 545 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 KCNJ12Q14500 433 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 NAPGQ99747 312 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 ZNF142P52746 1687 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 CTAGE15A4D2H0 777 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 CTAGE8P0CG41 777 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 PRCPP42785 496 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 ATP2C1P98194 919 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 ZSCAN26Q16670 478 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 TMTC3Q6ZXV5 915 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 CTAGE6Q86UF2 777 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 CTAGE4Q8IX94 777 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 TXLNBQ8N3L3 684 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 ANKRD20A12PQ8NF67 263 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 TTF2Q9UNY4 1162 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 PP2D1A8MPX8 630 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 CYP2D6P10635 497 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 ARHGAP25P42331 645 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 EIF5P55010 431 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 MYH7P12883 1935 aa10.45□□□□□ -0.74
LIMCH1-215ENST00000512632 NID2Q14112 1375 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 CCDC102AQ96A19 550 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 MTA3Q9BTC8 594 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 HDAC6Q9UBN7 1215 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 MAP2K7O14733 419 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 BMP15O95972 392 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 PPP2R5BQ15173 497 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 E2F4Q16254 413 aa10.44□□□□□ -0.74
LIMCH1-215ENST00000512632 TCP11X2Q5H9J9 407 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms