RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 WDR18Q9BV38 432 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 KAT14Q9H8E8 782 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 CLIP2Q9UDT6 1046 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 FZD1Q9UP38 647 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 HPS5Q9UPZ3 1129 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 PASKQ96RG2 1323 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 PLXNA1Q9UIW2 1896 aa8.43□□□□□ -1.06
NUP54-204ENST00000506098 WDR81Q562E7 1941 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 A0A1W2PRG0 241 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 USP17L5A8MUK1 530 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 TULP1O00294 542 aaPredicted RBP8.42□□□□□ -1.06
NUP54-204ENST00000506098 ZBTB43O43298 467 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 TOMM70O94826 608 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 SNHG28P0DPA3 235 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 PTPRAP18433 802 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 YY1P25490 414 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 ICA1Q05084 483 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 FMR1Q06787 632 aaKnown RBP eCLIP8.42□□□□□ -1.06
NUP54-204ENST00000506098 RAB3GAP1Q15042 981 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 CST9Q5W186 159 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 SYNE3Q6ZMZ3 975 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 NFXL1Q6ZNB6 911 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 CATIPQ7Z7H3 387 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 PNMA1Q8ND90 353 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 SMC1BQ8NDV3 1235 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 GMCL1P1Q8NEA9 526 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 GTF3C6Q969F1 213 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 ZKSCAN4Q969J2 545 aaPredicted RBP8.42□□□□□ -1.06
NUP54-204ENST00000506098 CHMP4CQ96CF2 233 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 INTS4Q96HW7 963 aaKnown RBP8.42□□□□□ -1.06
NUP54-204ENST00000506098 LARP6Q9BRS8 491 aaKnown RBP8.42□□□□□ -1.06
NUP54-204ENST00000506098 ARHGEF10LQ9HCE6 1279 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 STX8Q9UNK0 236 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 TMX2Q9Y320 296 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 SLC12A7Q9Y666 1083 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 SNCAIPQ9Y6H5 919 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 KIAA1217Q5T5P2 1943 aa8.42□□□□□ -1.06
NUP54-204ENST00000506098 BRD2P25440 801 aaKnown RBP8.41□□□□□ -1.06
NUP54-204ENST00000506098 ST3GAL1Q11201 340 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 SCRN1Q12765 414 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 FSTL1Q12841 308 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 PRKG1Q13976 671 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 VGLL4Q14135 290 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 CLEC10AQ8IUN9 316 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 C2orf69Q8N8R5 385 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 FANCBQ8NB91 859 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 ZNF784Q8NCA9 323 aaPredicted RBP8.41□□□□□ -1.06
NUP54-204ENST00000506098 IPO9Q96P70 1041 aaKnown RBP8.41□□□□□ -1.06
NUP54-204ENST00000506098 SLKQ9H2G2 1235 aaPredicted RBP8.41□□□□□ -1.06
NUP54-204ENST00000506098 SH2D4AQ9H788 454 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 AS3MTQ9HBK9 375 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 GBA2Q9HCG7 927 aaPredicted RBP8.41□□□□□ -1.06
NUP54-204ENST00000506098 PICK1Q9NRD5 415 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 FAM217BQ9NTX9 383 aaPredicted RBP8.41□□□□□ -1.06
NUP54-204ENST00000506098 AFG3L2Q9Y4W6 797 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 CSADQ9Y600 493 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 LCTP09848 1927 aa8.41□□□□□ -1.06
NUP54-204ENST00000506098 CCDC196A0A1B0GTZ2 297 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 PALM3A6NDB9 673 aaPredicted RBP8.4□□□□□ -1.06
NUP54-204ENST00000506098 SPDYE5A6NIY4 337 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 GOLGA8BA8MQT2 603 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 C19orf81C9J6K1 198 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 USP17L10C9JJH3 530 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 F5H6K3 240 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 CELF2O95319 508 aaKnown RBP8.4□□□□□ -1.06
NUP54-204ENST00000506098 PDHBP11177 359 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 SMARCA1P28370 1054 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 CDC27P30260 824 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 ECE1P42892 770 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 METAP2P50579 478 aaKnown RBP eCLIP8.4□□□□□ -1.06
NUP54-204ENST00000506098 PPATQ06203 517 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 KLRC3Q07444 240 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 GRM4Q14833 912 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 NTRK3Q16288 839 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 SH3D19Q5HYK7 790 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 MOB2Q70IA6 237 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 NOL8Q76FK4 1167 aaKnown RBP8.4□□□□□ -1.06
NUP54-204ENST00000506098 ERO1BQ86YB8 467 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 ZNF280CQ8ND82 737 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 SMARCC2Q8TAQ2 1214 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 ACER1Q8TDN7 264 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 DCAF4Q8WV16 495 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 GMCL1Q96IK5 515 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 C12orf42Q96LP6 360 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 LLPHQ9BRT6 129 aaKnown RBP8.4□□□□□ -1.06
NUP54-204ENST00000506098 KIAA1683Q9H0B3 1180 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 VCPKMTQ9H867 229 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 GOPCQ9HD26 462 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 RBM28Q9NW13 759 aaKnown RBP8.4□□□□□ -1.06
NUP54-204ENST00000506098 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.4□□□□□ -1.06
NUP54-204ENST00000506098 MAD2L2Q9UI95 211 aa8.4□□□□□ -1.06
NUP54-204ENST00000506098 PLXNB2O15031 1838 aa8.4□□□□□ -1.07
NUP54-204ENST00000506098 GOLGA8AA7E2F4 631 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 UBE2Q2LH0YL09 131 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 CXCL11O14625 94 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 DHX16O60231 1041 aaKnown RBP8.39□□□□□ -1.07
NUP54-204ENST00000506098 PLA2G6O60733 806 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 CTDNEP1O95476 244 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 IFNAR1P17181 557 aa8.39□□□□□ -1.07
NUP54-204ENST00000506098 KIF5BP33176 963 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms