RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 SYT10Q6XYQ8 523 aa14.52□□□□□ -0.08
COL6A3-212ENST00000491769 DIS3L2Q8IYB7 885 aaKnown RBP14.52□□□□□ -0.08
COL6A3-212ENST00000491769 REXO1Q8N1G1 1221 aaKnown RBP14.52□□□□□ -0.08
COL6A3-212ENST00000491769 PPFIBP2Q8ND30 876 aa14.52□□□□□ -0.08
COL6A3-212ENST00000491769 HESX1Q9UBX0 185 aa14.52□□□□□ -0.08
COL6A3-212ENST00000491769 SMCO2A6NFE2 343 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 I3L4J1 428 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 MCF2L2Q86YR7 1114 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 TBC1D32Q96NH3 1257 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 TLR3O15455 904 aaKnown RBP14.52□□□□□ -0.09
COL6A3-212ENST00000491769 TBC1D8O95759 1140 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 RPS6KB1P23443 525 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 PHKBQ93100 1093 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 KCNH3Q9ULD8 1083 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 MAP3K19Q56UN5 1328 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 LRRIQ4A6NIV6 560 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 ATP2B4P23634 1241 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 ARFGAP2Q8N6H7 521 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 CCDC68Q9H2F9 335 aa14.52□□□□□ -0.09
COL6A3-212ENST00000491769 ZAP70P43403 619 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 SLC9C1Q4G0N8 1177 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 CCDC105Q8IYK2 499 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 VPS37BQ9H9H4 285 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 CCPG1Q9ULG6 757 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 K7ENM7 598 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 RRP9O43818 475 aaKnown RBP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 PPFIA1Q13136 1202 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 TRIM56Q9BRZ2 755 aaKnown RBP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 FNDC3AQ9Y2H6 1198 aaKnown RBP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 NDUFB9Q9Y6M9 179 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 IBTKQ9P2D0 1353 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 PFDN6O15212 129 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 ANO1Q5XXA6 986 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 POMGNT1Q8WZA1 660 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 TMEM191BP0C7N4 346 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 SKIV2LQ15477 1246 aaKnown RBP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 C8orf74Q6P047 294 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 MICALL1Q8N3F8 863 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 NRBP2Q9NSY0 501 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 KDRP35968 1356 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 PRXQ9BXM0 1461 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 CEP104O60308 925 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 SAT1P21673 171 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 NUCKS1Q9H1E3 243 aaKnown RBP14.51□□□□□ -0.09
COL6A3-212ENST00000491769 KCNJ14Q9UNX9 436 aa14.51□□□□□ -0.09
COL6A3-212ENST00000491769 ZMYM3Q14202 1370 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 LONRF3Q496Y0 759 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 ARPP21Q9UBL0 812 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-212ENST00000491769 SEPT6Q14141 434 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 POLA2Q14181 598 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 GCKRQ14397 625 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 RBBP5Q15291 538 aaKnown RBP14.5□□□□□ -0.09
COL6A3-212ENST00000491769 CTAGE3PQ8IX95 158 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 SCYL1Q96KG9 808 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 SWAP70Q9UH65 585 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 CAPN2P17655 700 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 LACTBP83111 547 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-212ENST00000491769 TMTC4Q5T4D3 741 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 SLC27A2O14975 620 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 ICA1Q05084 483 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 KLHL30Q0D2K2 578 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 CYP26C1Q6V0L0 522 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 GPBP1Q86WP2 473 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 KLHL7Q8IXQ5 586 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 PSTPIP2Q9H939 334 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 ZSCAN20P17040 1043 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-212ENST00000491769 KRT15P19012 456 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 CHMLP26374 656 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 ZNF772Q68DY9 489 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-212ENST00000491769 METTL23Q86XA0 190 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 LGR6Q9HBX8 967 aa14.5□□□□□ -0.09
COL6A3-212ENST00000491769 BZW2Q9Y6E2 419 aaKnown RBP14.5□□□□□ -0.09
COL6A3-212ENST00000491769 SLC4A1P02730 911 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 TRIM14Q14142 442 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 BLZF1Q9H2G9 400 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 GSTA1P08263 222 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 GSTA2P09210 222 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 DLATP10515 647 aaKnown RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 NOLC1Q14978 699 aaKnown RBP eCLIP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 RSRC2Q7L4I2 434 aaKnown RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 KRT222Q8N1A0 295 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 TTC30BQ8N4P2 665 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 TEKT3Q9BXF9 490 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 TRPC5Q9UL62 973 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 PLEKHG3A1L390 1219 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 NXNQ6DKJ4 435 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 PDZD4Q76G19 769 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 RAB20Q9NX57 234 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 VPS54Q9P1Q0 977 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 ARHGEF10O15013 1369 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 PPEF1O14829 653 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 CASQ2O14958 399 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-212ENST00000491769 FBXO11Q86XK2 927 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 ATP2A3Q93084 1043 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 ATP8A2Q9NTI2 1148 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 BTDP43251 543 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 SH2D4BQ5SQS7 431 aa14.49□□□□□ -0.09
COL6A3-212ENST00000491769 ZNF449Q6P9G9 518 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms