RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SLC12A7Q9Y666 1083 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 TLL2Q9Y6L7 1015 aa16.25■□□□□ 0.19
C9orf3-221ENST00000489562 KLF18A0A0U1RQI7 1052 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 APOBRQ0VD83 1088 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 PPP2R5BQ15173 497 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 APOA5Q6Q788 366 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 OPTNQ96CV9 577 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 ZNF274Q96GC6 653 aaPredicted RBP16.24■□□□□ 0.19
C9orf3-221ENST00000489562 ZSCAN31Q96LW9 406 aaPredicted RBP16.24■□□□□ 0.19
C9orf3-221ENST00000489562 MAP3K14Q99558 947 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 TSHZ2Q9NRE2 1034 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.24■□□□□ 0.19
C9orf3-221ENST00000489562 AFG3L2Q9Y4W6 797 aa16.24■□□□□ 0.19
C9orf3-221ENST00000489562 A0A1W2PRG0 241 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 CXCL11O14625 94 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 ZBTB43O43298 467 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 ZBTB48P10074 688 aaPredicted RBP16.23■□□□□ 0.19
C9orf3-221ENST00000489562 APLP1P51693 650 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 BACE1P56817 501 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 SPP2Q13103 211 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 RGMBQ6NW40 437 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 USP17L2Q6R6M4 530 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 CCDC84Q86UT8 332 aaPredicted RBP16.23■□□□□ 0.19
C9orf3-221ENST00000489562 LRRC47Q8N1G4 583 aaKnown RBP16.23■□□□□ 0.19
C9orf3-221ENST00000489562 ACER1Q8TDN7 264 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 LPAR1Q92633 364 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 CHMP4CQ96CF2 233 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 OTUD5Q96G74 571 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 VCPKMTQ9H867 229 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 SENP2Q9HC62 589 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 SH2B1Q9NRF2 756 aaPredicted RBP16.23■□□□□ 0.19
C9orf3-221ENST00000489562 CREBZFQ9NS37 354 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 ABT1Q9ULW3 272 aaKnown RBP16.23■□□□□ 0.19
C9orf3-221ENST00000489562 KCNH4Q9UQ05 1017 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 NID2Q14112 1375 aa16.23■□□□□ 0.19
C9orf3-221ENST00000489562 MYH6P13533 1939 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 GOLGA8BA8MQT2 603 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 ECE1P42892 770 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 TROAPQ12815 778 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 MTMR2Q13614 643 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 HSCBQ8IWL3 235 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 DCAF4Q8WV16 495 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 GMCL1Q96IK5 515 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 WNK4Q96J92 1243 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 C12orf42Q96LP6 360 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 BRPF3Q9ULD4 1205 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 TPCN1Q9ULQ1 816 aa16.22■□□□□ 0.19
C9orf3-221ENST00000489562 CCDC196A0A1B0GTZ2 297 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 TRIM75PA6NK02 468 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 F5H6K3 240 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 PDIA3P30101 505 aaKnown RBP16.21■□□□□ 0.19
C9orf3-221ENST00000489562 KIF5BP33176 963 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 ANP32AP39687 249 aaKnown RBP16.21■□□□□ 0.19
C9orf3-221ENST00000489562 ZNF157P51786 506 aaPredicted RBP16.21■□□□□ 0.19
C9orf3-221ENST00000489562 KLRC3Q07444 240 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 ASPRV1Q53RT3 343 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 SH3D19Q5HYK7 790 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 SLFN13Q68D06 897 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 MICU3Q86XE3 530 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 CTCFLQ8NI51 663 aaPredicted RBP16.21■□□□□ 0.19
C9orf3-221ENST00000489562 TMOD4Q9NZQ9 345 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 NAP1L2Q9ULW6 460 aaPredicted RBP16.21■□□□□ 0.19
C9orf3-221ENST00000489562 PARP14Q460N5 1801 aa16.21■□□□□ 0.19
C9orf3-221ENST00000489562 IRF6O14896 467 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 NDUFB10O96000 172 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 SNHG28P0DPA3 235 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 PDHBP11177 359 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 SLC1A4P43007 532 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 GNAQP50148 359 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 METAP2P50579 478 aaKnown RBP eCLIP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 SNAPC2Q13487 334 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 GRM4Q14833 912 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 GPATCH4Q5T3I0 446 aaKnown RBP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 SPRYD7Q5W111 196 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 NOL8Q76FK4 1167 aaKnown RBP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 FANCBQ8NB91 859 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 PROCA1Q8NCQ7 364 aaPredicted RBP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 NUP133Q8WUM0 1156 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 CCDC102AQ96A19 550 aa16.2■□□□□ 0.18
C9orf3-221ENST00000489562 SLKQ9H2G2 1235 aaPredicted RBP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 RBM28Q9NW13 759 aaKnown RBP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.2■□□□□ 0.18
C9orf3-221ENST00000489562 A0A0G2JLL6 359 aaPredicted RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 GOLGA8AA7E2F4 631 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 K7ELQ4 463 aaPredicted RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 WDR46O15213 610 aaKnown RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 RAD21O60216 631 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 DHX16O60231 1041 aaKnown RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 PFKFB2O60825 505 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 CD2BP2O95400 341 aaKnown RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 PARP1P09874 1014 aaKnown RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 GTF2A2P52657 109 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 HMGCS2P54868 508 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 BECN1Q14457 450 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 ZYXQ15942 572 aaKnown RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 RTN1Q16799 776 aa16.19■□□□□ 0.18
C9orf3-221ENST00000489562 FASTKD5Q7L8L6 764 aaKnown RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 PRRT2Q7Z6L0 340 aaPredicted RBP16.19■□□□□ 0.18
C9orf3-221ENST00000489562 RASAL3Q86YV0 1011 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms