RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 KIF23Q02241 960 aaPredicted RBP22.68■■□□□ 1.22
CCM2-216ENST00000488727 MOGSQ13724 837 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 SKOR2Q2VWA4 1001 aaPredicted RBP22.68■■□□□ 1.22
CCM2-216ENST00000488727 RCSD1Q6JBY9 416 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 PRRT2Q7Z6L0 340 aaPredicted RBP22.68■■□□□ 1.22
CCM2-216ENST00000488727 CLIP2Q9UDT6 1046 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 STX8Q9UNK0 236 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 TTLL1O95922 423 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 HMGCS2P54868 508 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 ZYXQ15942 572 aaKnown RBP22.68■■□□□ 1.22
CCM2-216ENST00000488727 IQCA1Q86XH1 822 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 JAKMIP1Q96N16 626 aaKnown RBP22.68■■□□□ 1.22
CCM2-216ENST00000488727 ZSCAN10Q96SZ4 725 aaPredicted RBP22.68■■□□□ 1.22
CCM2-216ENST00000488727 FEZ1Q99689 392 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 KIAA1683Q9H0B3 1180 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 ARHGEF10LQ9HCE6 1279 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 TMX2Q9Y320 296 aa22.68■■□□□ 1.22
CCM2-216ENST00000488727 SH3D19Q5HYK7 790 aa22.67■■□□□ 1.22
CCM2-216ENST00000488727 BRI3BPQ8WY22 251 aa22.67■■□□□ 1.22
CCM2-216ENST00000488727 TMX3Q96JJ7 454 aa22.67■■□□□ 1.22
CCM2-216ENST00000488727 TNKSO95271 1327 aa22.67■■□□□ 1.22
CCM2-216ENST00000488727 CCL15-CCL14A0A0B4J2E2 113 aa22.66■■□□□ 1.22
CCM2-216ENST00000488727 CCL15Q16663 113 aa22.66■■□□□ 1.22
CCM2-216ENST00000488727 L1TD1Q5T7N2 865 aaKnown RBP22.66■■□□□ 1.22
CCM2-216ENST00000488727 ENAHQ8N8S7 591 aaPredicted RBP22.66■■□□□ 1.22
CCM2-216ENST00000488727 MKL1Q969V6 931 aa22.66■■□□□ 1.22
CCM2-216ENST00000488727 INTS4Q96HW7 963 aaKnown RBP22.66■■□□□ 1.22
CCM2-216ENST00000488727 UBAC1Q9BSL1 405 aa22.66■■□□□ 1.22
CCM2-216ENST00000488727 EMILIN3Q9NT22 766 aa22.66■■□□□ 1.22
CCM2-216ENST00000488727 TESPA1A2RU30 521 aaPredicted RBP22.65■■□□□ 1.22
CCM2-216ENST00000488727 MANSC4A6NHS7 340 aaPredicted RBP22.65■■□□□ 1.22
CCM2-216ENST00000488727 C19orf81C9J6K1 198 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 CETPP11597 493 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 CPA1P15085 419 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 SEC23AQ15436 765 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 KIAA1755Q5JYT7 1200 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 LRRC47Q8N1G4 583 aaKnown RBP22.65■■□□□ 1.22
CCM2-216ENST00000488727 PTPN18Q99952 460 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 PRC1O43663 620 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 MCM5P33992 734 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 TCEANC2Q96MN5 208 aa22.65■■□□□ 1.22
CCM2-216ENST00000488727 GOLGA6L22H0YM25 854 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 BAG4O95429 457 aaKnown RBP22.64■■□□□ 1.21
CCM2-216ENST00000488727 MAP2K2P36507 400 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 EXOSC10Q01780 885 aaKnown RBP22.64■■□□□ 1.21
CCM2-216ENST00000488727 PPP4R3BQ5MIZ7 849 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 DGKHQ86XP1 1220 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 TTC14Q96N46 770 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 TMEM47Q9BQJ4 181 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 SH2D4AQ9H788 454 aa22.64■■□□□ 1.21
CCM2-216ENST00000488727 GPHNQ9NQX3 736 aaPredicted RBP22.64■■□□□ 1.21
CCM2-216ENST00000488727 FSD2A1L4K1 749 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 CASTP20810 708 aaKnown RBP22.63■■□□□ 1.21
CCM2-216ENST00000488727 USP14P54578 494 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 USP17L2Q6R6M4 530 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 GADL1Q6ZQY3 521 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 DHX32Q7L7V1 743 aaKnown RBP22.63■■□□□ 1.21
CCM2-216ENST00000488727 IGDCC4Q8TDY8 1250 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 C12orf42Q96LP6 360 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 LRRC2Q9BYS8 371 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 VCPKMTQ9H867 229 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 SENP2Q9HC62 589 aa22.63■■□□□ 1.21
CCM2-216ENST00000488727 IGF2BP3O00425 579 aaKnown RBP eCLIP22.62■■□□□ 1.21
CCM2-216ENST00000488727 IFIT3O14879 490 aaKnown RBP22.62■■□□□ 1.21
CCM2-216ENST00000488727 TM4SF4P48230 202 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 CCDC178Q5BJE1 867 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 TREML2Q5T2D2 321 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 GPAT2Q6NUI2 795 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 PROCA1Q8NCQ7 364 aaPredicted RBP22.62■■□□□ 1.21
CCM2-216ENST00000488727 ANKS1AQ92625 1134 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 BTBD19C9JJ37 291 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 HMGB1P09429 215 aaKnown RBP22.62■■□□□ 1.21
CCM2-216ENST00000488727 TOP1P11387 765 aaKnown RBP22.62■■□□□ 1.21
CCM2-216ENST00000488727 PSMA5P28066 241 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 SREBF2Q12772 1141 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 BLOC1S2Q6QNY1 142 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 FASTKD5Q7L8L6 764 aaKnown RBP22.62■■□□□ 1.21
CCM2-216ENST00000488727 RASGRP2Q7LDG7 609 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 SPICE1Q8N0Z3 855 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 FAM43AQ8N2R8 423 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 ZSWIM6Q9HCJ5 1215 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 TMOD4Q9NZQ9 345 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 SYNPO2Q9UMS6 1093 aa22.62■■□□□ 1.21
CCM2-216ENST00000488727 WDR19Q8NEZ3 1342 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 F5H6K3 240 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 VCAM1P19320 739 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 INHBEP58166 350 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 KLRC3Q07444 240 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 UPF3BQ9BZI7 483 aaKnown RBP22.61■■□□□ 1.21
CCM2-216ENST00000488727 TM6SF1Q9BZW5 370 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 GOPCQ9HD26 462 aa22.61■■□□□ 1.21
CCM2-216ENST00000488727 ISY1Q9ULR0 285 aaKnown RBP22.61■■□□□ 1.21
CCM2-216ENST00000488727 SH2B2O14492 632 aaPredicted RBP22.6■■□□□ 1.21
CCM2-216ENST00000488727 RAD21O60216 631 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 RPS6KB1P23443 525 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 SART3Q15020 963 aaKnown RBP22.6■■□□□ 1.21
CCM2-216ENST00000488727 TMEM67Q5HYA8 995 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 IFIT1BQ5T764 474 aaKnown RBP22.6■■□□□ 1.21
CCM2-216ENST00000488727 IFNL1Q8IU54 200 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 GMCL1P1Q8NEA9 526 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms