RNA–Protein interactions for RNA: ENST00000487068.1

NEK4-204, Transcript of NIMA related kinase 4, humanhuman

TSL 2

Gene NEK4, Length 631 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-204ENST00000487068 ARHGAP39Q9C0H5 1083 aa12.13□□□□□ -0.47
NEK4-204ENST00000487068 KIAA1683Q9H0B3 1180 aa12.13□□□□□ -0.47
NEK4-204ENST00000487068 ASCC2Q9H1I8 757 aaPredicted RBP12.13□□□□□ -0.47
NEK4-204ENST00000487068 CWC22Q9HCG8 908 aaKnown RBP12.13□□□□□ -0.47
NEK4-204ENST00000487068 PTPN22Q9Y2R2 807 aa12.13□□□□□ -0.47
NEK4-204ENST00000487068 RAD50Q92878 1312 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 ADGRA2Q96PE1 1338 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 FCGRTP55899 365 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 C17orf99Q6UX52 265 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 SKAP1Q86WV1 359 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 CCAR1Q8IX12 1150 aaKnown RBP12.12□□□□□ -0.47
NEK4-204ENST00000487068 SPICE1Q8N0Z3 855 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 RPAP3Q9H6T3 665 aaPredicted RBP12.12□□□□□ -0.47
NEK4-204ENST00000487068 KANSL2Q9H9L4 492 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 GOPCQ9HD26 462 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 EMILIN3Q9NT22 766 aa12.12□□□□□ -0.47
NEK4-204ENST00000487068 ZMYM6O95789 1325 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 A0A1W2PRG0 241 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L15C9J2P7 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L13C9JLJ4 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L11C9JVI0 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L18D6R9N7 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L22D6RA61 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L17D6RBQ6 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L19D6RCP7 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L20D6RJB6 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 FOXP2O15409 715 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 RANBP6O60518 1105 aaKnown RBP12.11□□□□□ -0.47
NEK4-204ENST00000487068 EEF2P13639 858 aaKnown RBP12.11□□□□□ -0.47
NEK4-204ENST00000487068 PSMC4P43686 418 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 GCLCP48506 637 aaPredicted RBP12.11□□□□□ -0.47
NEK4-204ENST00000487068 HERVK_113P62684 666 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 USP17L24Q0WX57 530 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 FAM110CQ1W6H9 321 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 FAM47AQ5JRC9 791 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 ARMC5Q96C12 935 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 C12orf42Q96LP6 360 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 HTTP42858 3142 aa12.11□□□□□ -0.47
NEK4-204ENST00000487068 MKI67P46013 3256 aaKnown RBP12.11□□□□□ -0.47
NEK4-204ENST00000487068 KIAA0100Q14667 2235 aaKnown RBP12.1□□□□□ -0.47
NEK4-204ENST00000487068 PLIN4Q96Q06 1357 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 TNPO2O14787 897 aaKnown RBP12.1□□□□□ -0.47
NEK4-204ENST00000487068 FGAP02671 866 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 BCRP11274 1271 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 EN2P19622 333 aaPredicted RBP12.1□□□□□ -0.47
NEK4-204ENST00000487068 HOXA7P31268 230 aaPredicted RBP12.1□□□□□ -0.47
NEK4-204ENST00000487068 FXR1P51114 621 aaKnown RBP eCLIP12.1□□□□□ -0.47
NEK4-204ENST00000487068 TFAP4Q01664 338 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 GTF3C2Q8WUA4 911 aaPredicted RBP12.1□□□□□ -0.47
NEK4-204ENST00000487068 LPAR1Q92633 364 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 TMEM106CQ9BVX2 250 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 VCPKMTQ9H867 229 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 MYPNQ86TC9 1320 aa12.1□□□□□ -0.47
NEK4-204ENST00000487068 ZNF213O14771 459 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 FLOT1O75955 427 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 CHMLP26374 656 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 HOXD10P28358 340 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 ALX1Q15699 326 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 IMMTQ16891 758 aaKnown RBP12.09□□□□□ -0.47
NEK4-204ENST00000487068 WDR78Q5VTH9 848 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 LRRC47Q8N1G4 583 aaKnown RBP12.09□□□□□ -0.47
NEK4-204ENST00000487068 RAET1EQ8TD07 263 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 CEP95Q96GE4 821 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 TRIM47Q96LD4 638 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 P2RX7Q99572 595 aaKnown RBP12.09□□□□□ -0.47
NEK4-204ENST00000487068 RNF41Q9H4P4 317 aaPredicted RBP12.09□□□□□ -0.47
NEK4-204ENST00000487068 CLIP2Q9UDT6 1046 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 STX8Q9UNK0 236 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 MTMR7Q9Y216 660 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 TMX2Q9Y320 296 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 PTCH2Q9Y6C5 1203 aa12.09□□□□□ -0.47
NEK4-204ENST00000487068 WDR46O15213 610 aaKnown RBP12.08□□□□□ -0.48
NEK4-204ENST00000487068 TTLL1O95922 423 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 GNRH1P01148 92 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 CAP1Q01518 475 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 SLC9C1Q4G0N8 1177 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 PPP4R3BQ5MIZ7 849 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 CASC1Q6TDU7 716 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 CATSPERGQ6ZRH7 1159 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 MFSD6Q6ZSS7 791 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 COA7Q96BR5 231 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 CHMP4CQ96CF2 233 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 DSCC1Q9BVC3 393 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 CTNNA3Q9UI47 895 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 ANAPC4Q9UJX5 808 aa12.08□□□□□ -0.48
NEK4-204ENST00000487068 CENPFP49454 3210 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 FRMPD3Q5JV73 1810 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 SPDYE16A6NNV3 312 aaPredicted RBP12.07□□□□□ -0.48
NEK4-204ENST00000487068 PEX10O60683 326 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 ERVK-9P63128 1117 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 ERVK-24P63145 666 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 IKQ13123 557 aaPredicted RBP12.07□□□□□ -0.48
NEK4-204ENST00000487068 PLS1Q14651 629 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 FAM83BQ5T0W9 1011 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 AKNAD1Q5T1N1 836 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 KIAA1211Q6ZU35 1233 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 NBPF11Q86T75 865 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 TBC1D10CQ8IV04 446 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 GPRC5AQ8NFJ5 357 aa12.07□□□□□ -0.48
NEK4-204ENST00000487068 NEDD1Q8NHV4 660 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms