RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 FANCLQ9NW38 375 aa18.24■□□□□ 0.51
COL7A1-210ENST00000487017 MAST3O60307 1309 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ERVK-7P63135 1459 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 GNA14O95837 355 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 FAM47AQ5JRC9 791 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ARHGEF10LQ9HCE6 1279 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 PSDA5PKW4 1024 aaPredicted RBP18.23■□□□□ 0.51
COL7A1-210ENST00000487017 PDIA3P30101 505 aaKnown RBP18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ADD1P35611 737 aaKnown RBP18.23■□□□□ 0.51
COL7A1-210ENST00000487017 RASEFQ8IZ41 740 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ZSCAN10Q96SZ4 725 aaPredicted RBP18.23■□□□□ 0.51
COL7A1-210ENST00000487017 CTSWP56202 376 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 NAA25Q14CX7 972 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 MAP7D1Q3KQU3 841 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ANTXR1Q9H6X2 564 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 PLCB1Q9NQ66 1216 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 A0A1W2PQ27 194 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 A0A1W2PQ64 194 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 A0A1W2PQD8 194 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ADCK5Q3MIX3 580 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 ASIC3Q9UHC3 531 aa18.23■□□□□ 0.51
COL7A1-210ENST00000487017 CIB2O75838 187 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 CLIC4Q9Y696 253 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 FANCBQ8NB91 859 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 NT5C3AQ9H0P0 336 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 ANAPC4Q9UJX5 808 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 RBM26Q5T8P6 1007 aaKnown RBP18.22■□□□□ 0.51
COL7A1-210ENST00000487017 MYCT1Q8N699 235 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 NLRC4Q9NPP4 1024 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 GCNT3O95395 438 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 ZSCAN26Q16670 478 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 RTEL1Q9NZ71 1219 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 CLASP1Q7Z460 1538 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 BCRP11274 1271 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 SLC1A4P43007 532 aa18.22■□□□□ 0.51
COL7A1-210ENST00000487017 CMTR1Q8N1G2 835 aaKnown RBP18.22■□□□□ 0.51
COL7A1-210ENST00000487017 MRPL44Q9H9J2 332 aaKnown RBP18.22■□□□□ 0.51
COL7A1-210ENST00000487017 AATKQ6ZMQ8 1374 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 A0A1B0GUA9 196 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 DNM2P50570 870 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 FGAP02671 866 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 CUL4AQ13619 759 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 UNC5CLQ8IV45 518 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 BLIDQ8IZY5 108 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 MED23Q9ULK4 1368 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 EXOC3O60645 756 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 ZNF827Q17R98 1081 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 MAPKAPK5Q8IW41 473 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 GDAP1L1Q96MZ0 367 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 SMCO2A6NFE2 343 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 ERVV-2B6SEH9 535 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 HARSP12081 509 aaKnown RBP18.21■□□□□ 0.51
COL7A1-210ENST00000487017 RAD51AP2Q09MP3 1159 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 SPATA1Q5VX52 437 aa18.21■□□□□ 0.51
COL7A1-210ENST00000487017 DDX41Q9UJV9 622 aaKnown RBP18.21■□□□□ 0.51
COL7A1-210ENST00000487017 PDE6AP16499 860 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 CLIC6Q96NY7 704 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 LSM14BQ9BX40 385 aaKnown RBP18.2■□□□□ 0.5
COL7A1-210ENST00000487017 CLEC11AQ9Y240 323 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 HYOU1Q9Y4L1 999 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 E7EVH7 732 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 TGFBRAP1Q8WUH2 860 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 H7C1D1 291 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 FAM204AQ9H8W3 233 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 GTPBP6O43824 516 aaPredicted RBP18.2■□□□□ 0.5
COL7A1-210ENST00000487017 PPFIA4O75335 1185 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 CCDC110Q8TBZ0 833 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 CFAP57Q96MR6 1250 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 RAB17Q9H0T7 212 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 HAUS4Q9H6D7 363 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 KDM3AQ9Y4C1 1321 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 CCDC105Q8IYK2 499 aa18.2■□□□□ 0.5
COL7A1-210ENST00000487017 STRN3Q13033 797 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 FBXO18Q8NFZ0 1043 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 MRRFQ96E11 262 aaKnown RBP18.19■□□□□ 0.5
COL7A1-210ENST00000487017 BIN2Q9UBW5 565 aaPredicted RBP18.19■□□□□ 0.5
COL7A1-210ENST00000487017 TPD52P55327 224 aaPredicted RBP18.19■□□□□ 0.5
COL7A1-210ENST00000487017 COPRSQ9NQ92 184 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 BTBD18B2RXH4 712 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 KRT71Q3SY84 523 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 PPP1R13BQ96KQ4 1090 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 KAT6BQ8WYB5 2073 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 TTC37Q6PGP7 1564 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 DKC1O60832 514 aaKnown RBP eCLIP18.19■□□□□ 0.5
COL7A1-210ENST00000487017 CEP85LQ5SZL2 805 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 TNKSO95271 1327 aa18.19■□□□□ 0.5
COL7A1-210ENST00000487017 BUB1BO60566 1050 aaPredicted RBP18.18■□□□□ 0.5
COL7A1-210ENST00000487017 TOM1O60784 492 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 USP17L12C9JPN9 530 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 USP17L21D6R901 530 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 PHKG2P15735 406 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 GBP1P32455 592 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 AMFRQ9UKV5 643 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 GOLGA8KD6RF30 607 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 DENND2CQ68D51 928 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 MYOCDQ8IZQ8 938 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 PARP2Q9UGN5 583 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 NRBP1Q9UHY1 535 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 LRRC24Q50LG9 513 aa18.18■□□□□ 0.5
COL7A1-210ENST00000487017 MAEAQ7L5Y9 396 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms