RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PIDD1Q9HB75 910 aa7.24□□□□□ -1.25
UPF3B-203ENST00000478840 MRPS23Q9Y3D9 190 aaKnown RBP7.24□□□□□ -1.25
UPF3B-203ENST00000478840 DNAJC25-GNG10A0A024R161 153 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 A0A087X0B3 334 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.23□□□□□ -1.25
UPF3B-203ENST00000478840 SPDYE3A6NKU9 549 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 KCNQ2O43526 872 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 MARCH6O60337 910 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 ITGAVP06756 1048 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 DRD2P14416 443 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 ELNP15502 786 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 STAT3P40763 770 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 PLEKHG6Q3KR16 790 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 NBPF12Q5TAG4 269 aaPredicted RBP7.23□□□□□ -1.25
UPF3B-203ENST00000478840 DYMQ7RTS9 669 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 ZNF227Q86WZ6 799 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 SMYD4Q8IYR2 804 aaPredicted RBP7.23□□□□□ -1.25
UPF3B-203ENST00000478840 DNAJB8Q8NHS0 232 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 RCC1LQ96I51 464 aaKnown RBP7.23□□□□□ -1.25
UPF3B-203ENST00000478840 MRPL4Q9BYD3 311 aaKnown RBP7.23□□□□□ -1.25
UPF3B-203ENST00000478840 IRF2BPLQ9H1B7 796 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 FAM105AQ9NUU6 356 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 APEX2Q9UBZ4 518 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 PCOLCE2Q9UKZ9 415 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 CEP131Q9UPN4 1083 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 ACTL7BQ9Y614 415 aa7.23□□□□□ -1.25
UPF3B-203ENST00000478840 TRBV23-1A0A0A0MS06 115 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 KRBA1A5PL33 1030 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 POU3F3P20264 500 aaPredicted RBP7.22□□□□□ -1.25
UPF3B-203ENST00000478840 L1CAMP32004 1257 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 ASPAP45381 313 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 CBX2Q14781 532 aaPredicted RBP7.22□□□□□ -1.25
UPF3B-203ENST00000478840 FAM209AQ5JX71 171 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 DCAF15Q66K64 600 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 ARMCX6Q7L4S7 300 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 CCDC144CPQ8IYA2 1237 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 C7orf61Q8IZ16 206 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 GBP3Q9H0R5 595 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 INTS7Q9NVH2 962 aaKnown RBP7.22□□□□□ -1.25
UPF3B-203ENST00000478840 WHRNQ9P202 907 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 KLHL42Q9P2K6 505 aa7.22□□□□□ -1.25
UPF3B-203ENST00000478840 A0A087WZG4 1122 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 SHOXO15266 292 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 CD247P20963 164 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 SUMO1P63165 101 aaKnown RBP7.21□□□□□ -1.26
UPF3B-203ENST00000478840 RNF4P78317 190 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 TRIM61Q5EBN2 209 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 YOD1Q5VVQ6 348 aaPredicted RBP7.21□□□□□ -1.26
UPF3B-203ENST00000478840 FDX2Q6P4F2 183 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 Q6ZS46 218 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.21□□□□□ -1.26
UPF3B-203ENST00000478840 DHX37Q8IY37 1157 aaKnown RBP7.21□□□□□ -1.26
UPF3B-203ENST00000478840 C12orf50Q8NA57 414 aaPredicted RBP7.21□□□□□ -1.26
UPF3B-203ENST00000478840 LRRN4CLQ8ND94 238 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 BVESQ8NE79 360 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 CHAC2Q8WUX2 184 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 MRGPRX3Q96LB0 322 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 FBXL18Q96ME1 805 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 CDC6Q99741 560 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 PLVAPQ9BX97 442 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 ACSS3Q9H6R3 686 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 CAAP1Q9H8G2 361 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 ENAMQ9NRM1 1142 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 ADAMTS8Q9UP79 889 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 ZNF451Q9Y4E5 1061 aa7.21□□□□□ -1.26
UPF3B-203ENST00000478840 F8W735 103 aaPredicted RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 PIK3R2O00459 728 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 GNB5O14775 395 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 RNGTTO60942 597 aaKnown RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 PPM1BO75688 479 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 ARHGEF15O94989 841 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 PDGFRBP09619 1106 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 PABPC1P11940 636 aaKnown RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 MYCLP1P12525 358 aaPredicted RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 TRIM28Q13263 835 aaKnown RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 AUHQ13825 339 aaKnown RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 C21orf62-AS1Q17RA5 79 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 RNF180Q86T96 592 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 OSBP2Q969R2 916 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 FGD4Q96M96 766 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 KREMEN1Q96MU8 473 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 CLUHP3Q96NS8 147 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 IPO9Q96P70 1041 aaKnown RBP7.2□□□□□ -1.26
UPF3B-203ENST00000478840 FAM86C1Q9NVL1 165 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 PRR13Q9NZ81 148 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 LRP2BPQ9P2M1 347 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 MAPRE3Q9UPY8 281 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 ATP8A1Q9Y2Q0 1164 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 EMC9Q9Y3B6 208 aa7.2□□□□□ -1.26
UPF3B-203ENST00000478840 GSG1L2A8MUP6 293 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 IRS4O14654 1257 aaPredicted RBP7.19□□□□□ -1.26
UPF3B-203ENST00000478840 RAPGEF3O95398 923 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 POMZP3Q6PJE2 187 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 TRIM59Q8IWR1 403 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 ARHGEF39Q8N4T4 335 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 RNF141Q8WVD5 230 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 PSMG3-AS1Q96PY0 264 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 ASPNQ9BXN1 380 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 MKRN2Q9H000 416 aaKnown RBP7.19□□□□□ -1.26
UPF3B-203ENST00000478840 RRAGCQ9HB90 399 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms