RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RNF112Q9ULX5 631 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 SLC6A14Q9UN76 642 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 DUOX1Q9NRD9 1551 aa8.69□□□□□ -1.02
CCDC88A-213ENST00000476903 LTBP1Q14766 1721 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 PDE8AO60658 829 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 LMOD1P29536 600 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 HIRAP54198 1017 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 HTRA3P83110 453 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 WASHC4Q2M389 1173 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 EML3Q32P44 896 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 CCDC152Q4G0S7 254 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 EAPPQ56P03 285 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 PNMA8AQ86V59 439 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 CELF1Q92879 486 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 CEP63Q96MT8 703 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 MYH16Q9H6N6 1097 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 ZNRF3Q9ULT6 936 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 NOD1Q9Y239 953 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 COL4A1P02462 1669 aa8.68□□□□□ -1.02
CCDC88A-213ENST00000476903 SFI1A8K8P3 1242 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 VAMP4O75379 141 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 SOX11P35716 441 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 RPS8P62241 208 aaKnown RBP8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 RAC1P63000 192 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 KIAA2012Q0VF49 1180 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 FLIIQ13045 1269 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 MCTP1Q6DN14 999 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 NUDT8Q8WV74 236 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 BHMTQ93088 406 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 CDHR2Q9BYE9 1310 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 JPH1Q9HDC5 661 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 NAGPAQ9UK23 515 aa8.67□□□□□ -1.02
CCDC88A-213ENST00000476903 TRPM7Q96QT4 1865 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 LZTS3O60299 673 aaPredicted RBP8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 IGKV5-2P06315 115 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 ABL2P42684 1182 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 EXOSC9Q06265 439 aaKnown RBP8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 FKBP5Q13451 457 aaPredicted RBP8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 TNIP1Q15025 636 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 G2E3Q7L622 706 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 SUSD3Q96L08 255 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 EYA3Q99504 573 aa8.66□□□□□ -1.02
CCDC88A-213ENST00000476903 PASKQ96RG2 1323 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 ZBTB7BO15156 539 aaPredicted RBP8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 EPS15P42566 896 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 CTSWP56202 376 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 GPSM2P81274 684 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 CXCL9Q07325 125 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 CWF19L2Q2TBE0 894 aaKnown RBP8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 CIAPIN1Q6FI81 312 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 ANKRD18AQ8IVF6 992 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 DMRTC2Q8IXT2 367 aaPredicted RBP8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 JMYQ8N9B5 988 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 DNAAF4Q8WXU2 420 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 JARID2Q92833 1246 aaPredicted RBP8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 CDC5LQ99459 802 aaKnown RBP8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 SEC31BQ9NQW1 1179 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 GPRC5DQ9NZD1 345 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 POLLQ9UGP5 575 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 HCN4Q9Y3Q4 1203 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 PSME4Q14997 1843 aa8.65□□□□□ -1.02
CCDC88A-213ENST00000476903 PCNTO95613 3336 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 RAD17O75943 681 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 SKIP12755 728 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 NCOA4Q13772 614 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 GCKRQ14397 625 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 USP50Q70EL3 339 aaPredicted RBP8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 UBE3BQ7Z3V4 1068 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 CNTROBQ8N137 903 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 LINS1Q8NG48 757 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 TBC1D16Q8TBP0 767 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 WFDC12Q8WWY7 111 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 UBE2OQ9C0C9 1292 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 PHACTR1Q9C0D0 580 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 ADARB2Q9NS39 739 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 PODXL2Q9NZ53 605 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 ANKIB1Q9P2G1 1089 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 SCN9AQ15858 1988 aa8.64□□□□□ -1.03
CCDC88A-213ENST00000476903 RTL9Q8NET4 1388 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 ZNF521Q96K83 1311 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 TMEM88BA6NKF7 163 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 YDJCA8MPS7 323 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 UFL1O94874 794 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 NOS3P29474 1203 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 GMPSP49915 693 aaPredicted RBP8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 PSMA6P60900 246 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 MAP1SQ66K74 1059 aaPredicted RBP8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 PSAPL1Q6NUJ1 521 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 TTLL11Q8NHH1 800 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 BCL2L13Q9BXK5 485 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 ZC3H12CQ9C0D7 883 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 TSPAN10Q9H1Z9 355 aaPredicted RBP8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 ALG2Q9H553 416 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 DBNDD1Q9H9R9 158 aa8.63□□□□□ -1.03
CCDC88A-213ENST00000476903 POLR2AP24928 1970 aaKnown RBP8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 XDHP47989 1333 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 ECE2O60344 883 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 ATP2B4P23634 1241 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 GRIK5Q16478 980 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 PLA2G12BQ9BX93 195 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms