RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 NBPF12Q5TAG4 269 aaPredicted RBP6.97□□□□□ -1.29
HMGB1-207ENST00000468384 MAP3K21Q5TCX8 1036 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 FAM117BQ6P1L5 589 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 LYPD4Q6UWN0 246 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 RNF135Q8IUD6 432 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 ADHFE1Q8IWW8 467 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 KCNG4Q8TDN1 519 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 ARID3AQ99856 593 aa6.97□□□□□ -1.29
HMGB1-207ENST00000468384 REPIN1Q9BWE0 567 aaKnown RBP6.97□□□□□ -1.29
HMGB1-207ENST00000468384 C6orf229H3BNL8 230 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 TNNT2P45379 298 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-207ENST00000468384 VGLL4Q14135 290 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 PLEKHO1Q53GL0 409 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-207ENST00000468384 SLC39A5Q6ZMH5 540 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 ANKRD23Q86SG2 305 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.96□□□□□ -1.3
HMGB1-207ENST00000468384 COA7Q96BR5 231 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 MPHOSPH9Q99550 1183 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 ZNF536O15090 1300 aa6.96□□□□□ -1.3
HMGB1-207ENST00000468384 EPOPA6NHQ4 379 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 SPDYE5A6NIY4 337 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 LMNAP02545 664 aaKnown RBP6.95□□□□□ -1.3
HMGB1-207ENST00000468384 RAG1P15918 1043 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 SKOR1P84550 965 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 C1orf141Q5JVX7 400 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 TMEM240Q5SV17 173 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 MRPL14Q6P1L8 145 aaKnown RBP6.95□□□□□ -1.3
HMGB1-207ENST00000468384 OGFOD1Q8N543 542 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 SLC52A2Q9HAB3 445 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 POLLQ9UGP5 575 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 PPP2R3BQ9Y5P8 575 aa6.95□□□□□ -1.3
HMGB1-207ENST00000468384 DDX60Q8IY21 1712 aaKnown RBP6.94□□□□□ -1.3
HMGB1-207ENST00000468384 ZXDAP98168 799 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 FOXD4L6Q3SYB3 417 aaPredicted RBP6.94□□□□□ -1.3
HMGB1-207ENST00000468384 PADI6Q6TGC4 694 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 FOXD4L3Q6VB84 417 aaPredicted RBP6.94□□□□□ -1.3
HMGB1-207ENST00000468384 C16orf59Q7L2K0 433 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 TTC13Q8NBP0 860 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 TMC1Q8TDI8 760 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 TRIB2Q92519 343 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 PARK7Q99497 189 aaKnown RBP6.94□□□□□ -1.3
HMGB1-207ENST00000468384 EYA3Q99504 573 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 HINFPQ9BQA5 517 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 BSDC1Q9NW68 430 aaPredicted RBP6.94□□□□□ -1.3
HMGB1-207ENST00000468384 KCNK4Q9NYG8 393 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 NSFL1CQ9UNZ2 370 aaKnown RBP6.94□□□□□ -1.3
HMGB1-207ENST00000468384 TACC3Q9Y6A5 838 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 CEMIPQ8WUJ3 1361 aa6.94□□□□□ -1.3
HMGB1-207ENST00000468384 SCO2A0A1W2PP80 73 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 KIAA0355O15063 1070 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 ARHGAP6O43182 974 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 CYP2C8P10632 490 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 SLC5A1P13866 664 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 MYOGP15173 224 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 RIPPLY3P57055 190 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 TLE2Q04725 743 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 TRIM26Q12899 539 aaPredicted RBP6.93□□□□□ -1.3
HMGB1-207ENST00000468384 HIC1Q14526 733 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 SNX17Q15036 470 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 RUNDC1Q96C34 613 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 LSM14BQ9BX40 385 aaKnown RBP6.93□□□□□ -1.3
HMGB1-207ENST00000468384 TEX13AQ9BXU3 409 aaPredicted RBP6.93□□□□□ -1.3
HMGB1-207ENST00000468384 SLC12A5Q9H2X9 1139 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 CERS4Q9HA82 394 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 DAGLAQ9Y4D2 1042 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 CSADQ9Y600 493 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 OTOFQ9HC10 1997 aa6.93□□□□□ -1.3
HMGB1-207ENST00000468384 KRBA1A5PL33 1030 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 DNM1LO00429 736 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 MAN1A2O60476 641 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 CCND3P30281 292 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-207ENST00000468384 RABGGTBP53611 331 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 FLIIQ13045 1269 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 AMOTQ4VCS5 1084 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 PPM1JQ5JR12 505 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 CCDC174Q6PII3 467 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 DCLK2Q8N568 766 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 KDF1Q8NAX2 398 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-207ENST00000468384 ASIC4Q96FT7 647 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 NLRP3Q96P20 1036 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 RTKNQ9BST9 563 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 CACNA2D2Q9NY47 1150 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 TERF2IPQ9NYB0 399 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 FAM50BQ9Y247 325 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 CREBBPQ92793 2442 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 ZNF521Q96K83 1311 aa6.92□□□□□ -1.3
HMGB1-207ENST00000468384 RPAP1Q9BWH6 1393 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-207ENST00000468384 DOCK3Q8IZD9 2030 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 USP17L3A6NCW0 530 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 USP17L4A6NCW7 530 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 SRRM3A6NNA2 597 aaPredicted RBP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 NTRK1P04629 796 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 CLTBP09497 229 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 SHC2P98077 582 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 SRSF1Q07955 248 aaKnown RBP eCLIP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 CACNB2Q08289 660 aaPredicted RBP6.91□□□□□ -1.3
HMGB1-207ENST00000468384 SIGLEC14Q08ET2 396 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 GRB10Q13322 594 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 HLFQ16534 295 aa6.91□□□□□ -1.3
HMGB1-207ENST00000468384 USP17L1Q7RTZ2 530 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms