RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 PLAGL2Q9UPG8 496 aa6.52□□□□□ -1.37
CLK1-208ENST00000464454 SLC12A7Q9Y666 1083 aa6.52□□□□□ -1.37
CLK1-208ENST00000464454 U3KQE9 123 aa6.52□□□□□ -1.37
CLK1-208ENST00000464454 PRR33A8MZF0 331 aa6.51□□□□□ -1.37
CLK1-208ENST00000464454 SSBP05455 408 aaKnown RBP eCLIP6.51□□□□□ -1.37
CLK1-208ENST00000464454 POLR2BP30876 1174 aaKnown RBP6.51□□□□□ -1.37
CLK1-208ENST00000464454 GIPRP48546 466 aa6.51□□□□□ -1.37
CLK1-208ENST00000464454 AOC3Q16853 763 aa6.51□□□□□ -1.37
CLK1-208ENST00000464454 LCE3BQ5TA77 95 aa6.51□□□□□ -1.37
CLK1-208ENST00000464454 C19orf47Q8N9M1 422 aaKnown RBP6.51□□□□□ -1.37
CLK1-208ENST00000464454 AGBL5Q8NDL9 886 aa6.51□□□□□ -1.37
CLK1-208ENST00000464454 FLCNQ8NFG4 579 aa6.51□□□□□ -1.37
CLK1-208ENST00000464454 BCL7CQ8WUZ0 217 aaPredicted RBP6.51□□□□□ -1.37
CLK1-208ENST00000464454 TRIT1Q9H3H1 467 aaKnown RBP6.51□□□□□ -1.37
CLK1-208ENST00000464454 CNTNAP4Q9C0A0 1308 aa6.5□□□□□ -1.37
CLK1-208ENST00000464454 TNK2Q07912 1038 aa6.5□□□□□ -1.37
CLK1-208ENST00000464454 DTWD2Q8NBA8 298 aa6.5□□□□□ -1.37
CLK1-208ENST00000464454 SLC9A7Q96T83 725 aa6.5□□□□□ -1.37
CLK1-208ENST00000464454 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.5□□□□□ -1.378e-10■□□□□ 10.6
CLK1-208ENST00000464454 PITPNM2Q9BZ72 1349 aa6.5□□□□□ -1.37
CLK1-208ENST00000464454 CDKAL1Q5VV42 579 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 SMARCC1Q92922 1105 aaPredicted RBP6.49□□□□□ -1.37
CLK1-208ENST00000464454 SHDQ96IW2 340 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 Q96M66 194 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 SLC6A18Q96N87 628 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 KRTAP4-12Q9BQ66 201 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 GPR62Q9BZJ7 368 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 ASCC2Q9H1I8 757 aaPredicted RBP6.49□□□□□ -1.37
CLK1-208ENST00000464454 GPATCH2Q9NW75 528 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 ST14Q9Y5Y6 855 aa6.49□□□□□ -1.37
CLK1-208ENST00000464454 COL17A1Q9UMD9 1497 aaPredicted RBP6.48□□□□□ -1.37
CLK1-208ENST00000464454 H3BS24 57 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 ACRP10323 421 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 DNAJA1P31689 397 aaKnown RBP6.48□□□□□ -1.37
CLK1-208ENST00000464454 BBS9Q3SYG4 887 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 TNNI3KQ59H18 835 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 NBPF12Q5TAG4 269 aaPredicted RBP6.48□□□□□ -1.37
CLK1-208ENST00000464454 ANGEL2Q5VTE6 544 aaKnown RBP6.48□□□□□ -1.37
CLK1-208ENST00000464454 VWCEQ96DN2 955 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 HSPA12BQ96MM6 686 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 GMLQ99445 158 aa6.48□□□□□ -1.37
CLK1-208ENST00000464454 MKRN2Q9H000 416 aaKnown RBP6.48□□□□□ -1.37
CLK1-208ENST00000464454 SUCOQ9UBS9 1254 aaKnown RBP6.48□□□□□ -1.37
CLK1-208ENST00000464454 FGRP09769 529 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 PMS1P54277 932 aaKnown RBP6.47□□□□□ -1.37
CLK1-208ENST00000464454 GP2P55259 537 aaKnown RBP6.47□□□□□ -1.37
CLK1-208ENST00000464454 IKZF1Q13422 519 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 UNC5AQ6ZN44 842 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 TMPRSS7Q7RTY8 843 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 TP53INP2Q8IXH6 220 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 TMEM192Q8IY95 271 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 ANAPC16Q96DE5 110 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 PHAXQ9H814 394 aaKnown RBP6.47□□□□□ -1.37
CLK1-208ENST00000464454 SEMA3GQ9NS98 782 aa6.47□□□□□ -1.37
CLK1-208ENST00000464454 CASP7P55210 303 aa6.46□□□□□ -1.38
CLK1-208ENST00000464454 BNIP3Q12983 259 aa6.46□□□□□ -1.38
CLK1-208ENST00000464454 SF3A1Q15459 793 aaKnown RBP6.46□□□□□ -1.38
CLK1-208ENST00000464454 RUFY4Q6ZNE9 571 aa6.46□□□□□ -1.38
CLK1-208ENST00000464454 TTC6Q86TZ1 520 aa6.46□□□□□ -1.38
CLK1-208ENST00000464454 ENOX1Q8TC92 643 aaKnown RBP6.46□□□□□ -1.38
CLK1-208ENST00000464454 SREK1Q8WXA9 508 aaKnown RBP6.46□□□□□ -1.38
CLK1-208ENST00000464454 DRC1Q96MC2 740 aa6.46□□□□□ -1.38
CLK1-208ENST00000464454 PAK6Q9NQU5 681 aaPredicted RBP6.46□□□□□ -1.38
CLK1-208ENST00000464454 USP35Q9P2H5 1018 aa6.46□□□□□ -1.38
CLK1-208ENST00000464454 FAM86C2PA6NEL3 165 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 LRRN2O75325 713 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 CD8BP10966 210 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 SRFP11831 508 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 PPP2R5EQ16537 467 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 CLEC16AQ2KHT3 1053 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 NBPF9Q3BBW0 867 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 ZNF574Q6ZN55 896 aaPredicted RBP6.45□□□□□ -1.38
CLK1-208ENST00000464454 CCDC144CPQ8IYA2 1237 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 UBE2FQ969M7 185 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 DUSP15Q9H1R2 295 aaPredicted RBP6.45□□□□□ -1.38
CLK1-208ENST00000464454 ATP13A1Q9HD20 1204 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 PRR13Q9NZ81 148 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 LMCD1Q9NZU5 365 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 ZSWIM5Q9P217 1185 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 PCDHB12Q9Y5F1 795 aa6.45□□□□□ -1.38
CLK1-208ENST00000464454 A0A1W2PQH9 124 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 ADAMTS4O75173 837 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 FUT4P22083 530 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 TPP2P29144 1249 aaPredicted RBP6.44□□□□□ -1.38
CLK1-208ENST00000464454 NMIQ13287 307 aaPredicted RBP6.44□□□□□ -1.38
CLK1-208ENST00000464454 PLCL1Q15111 1095 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 ZYXQ15942 572 aaKnown RBP6.44□□□□□ -1.38
CLK1-208ENST00000464454 NFXL1Q6ZNB6 911 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 SPRED2Q7Z698 418 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 TSPYL5Q86VY4 417 aaPredicted RBP6.44□□□□□ -1.38
CLK1-208ENST00000464454 MCF2L2Q86YR7 1114 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 ZNF512BQ96KM6 892 aaPredicted RBP6.44□□□□□ -1.38
CLK1-208ENST00000464454 GOLGA2P5Q9HBQ8 144 aa6.44□□□□□ -1.38
CLK1-208ENST00000464454 ZNF214Q9UL59 606 aaPredicted RBP6.44□□□□□ -1.38
CLK1-208ENST00000464454 ZP2Q05996 745 aa6.43□□□□□ -1.38
CLK1-208ENST00000464454 WFDC3Q8IUB2 231 aa6.43□□□□□ -1.38
CLK1-208ENST00000464454 SYTL5Q8TDW5 730 aaPredicted RBP6.43□□□□□ -1.38
CLK1-208ENST00000464454 TANGO6Q9C0B7 1094 aa6.43□□□□□ -1.38
CLK1-208ENST00000464454 PRKAG3Q9UGI9 489 aa6.43□□□□□ -1.38
CLK1-208ENST00000464454 DUSP13Q9UII6 198 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms