RNA–Protein interactions for RNA: ENST00000454852.6

TRAF4-206, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 672 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-206ENST00000454852 CLIP2Q9UDT6 1046 aa13.17□□□□□ -0.3
TRAF4-206ENST00000454852 HPS5Q9UPZ3 1129 aa13.17□□□□□ -0.3
TRAF4-206ENST00000454852 KCNH4Q9UQ05 1017 aa13.17□□□□□ -0.3
TRAF4-206ENST00000454852 AFG3L2Q9Y4W6 797 aa13.17□□□□□ -0.3
TRAF4-206ENST00000454852 KLF18A0A0U1RQI7 1052 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 C19orf81C9J6K1 198 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 UBE2Q2LH0YL09 131 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 CXCL11O14625 94 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 ZBTB43O43298 467 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 USP14P54578 494 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 PPIL2Q13356 520 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 PRKG1Q13976 671 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 ME3Q16798 604 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 SYNE3Q6ZMZ3 975 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 LPAR1Q92633 364 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 GMCL1Q96IK5 515 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 VCPKMTQ9H867 229 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 ZNF408Q9H9D4 720 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 TLL2Q9Y6L7 1015 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 ZHX2Q9Y6X8 837 aa13.16□□□□□ -0.3
TRAF4-206ENST00000454852 USP17L10C9JJH3 530 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 F5H6K3 240 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 K7ELQ4 463 aaPredicted RBP13.15□□□□□ -0.3
TRAF4-206ENST00000454852 SMARCA1P28370 1054 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 ECE1P42892 770 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 BACE1P56817 501 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 KLRC3Q07444 240 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 CUL4AQ13619 759 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 GRM4Q14833 912 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 NFXL1Q6ZNB6 911 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 SAPCD2Q86UD0 394 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 ACER1Q8TDN7 264 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 DCAF4Q8WV16 495 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 GTF3C6Q969F1 213 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 TMX3Q96JJ7 454 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 CLMNQ96JQ2 1002 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 GOPCQ9HD26 462 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.15□□□□□ -0.3
TRAF4-206ENST00000454852 PTPRFP10586 1907 aa13.15□□□□□ -0.3
TRAF4-206ENST00000454852 LOC285556D6RIA3 1793 aa13.15□□□□□ -0.31
TRAF4-206ENST00000454852 PALM3A6NDB9 673 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-206ENST00000454852 TMEM88BA6NKF7 163 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 GOLGA8BA8MQT2 603 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 PLA2G6O60733 806 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 ZBTB48P10074 688 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-206ENST00000454852 PDHBP11177 359 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 ANP32AP39687 249 aaKnown RBP13.14□□□□□ -0.31
TRAF4-206ENST00000454852 SPP2Q13103 211 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 BECN1Q14457 450 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 HSCBQ8IWL3 235 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 LRRC47Q8N1G4 583 aaKnown RBP13.14□□□□□ -0.31
TRAF4-206ENST00000454852 FANCBQ8NB91 859 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 SLC10A4Q96EP9 437 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 ELP3Q9H9T3 547 aa13.14□□□□□ -0.31
TRAF4-206ENST00000454852 FAM217BQ9NTX9 383 aaPredicted RBP13.14□□□□□ -0.31
TRAF4-206ENST00000454852 RBM28Q9NW13 759 aaKnown RBP13.14□□□□□ -0.31
TRAF4-206ENST00000454852 A0A0G2JLL6 359 aaPredicted RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 CCDC196A0A1B0GTZ2 297 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 DHX16O60231 1041 aaKnown RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 LARGE1O95461 756 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 NDUFB10O96000 172 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 KIF5BP33176 963 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 GNAQP50148 359 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 METAP2P50579 478 aaKnown RBP eCLIP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 HUNKP57058 714 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 ZNF543Q08ER8 600 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 ST3GAL1Q11201 340 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 SCRN1Q12765 414 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 ASPRV1Q53RT3 343 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 GPATCH4Q5T3I0 446 aaKnown RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 SLFN13Q68D06 897 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 USP17L2Q6R6M4 530 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 PRRT2Q7Z6L0 340 aaPredicted RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 CCDC84Q86UT8 332 aaPredicted RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 OPTNQ96CV9 577 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 INTS4Q96HW7 963 aaKnown RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 WNK4Q96J92 1243 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 LZTS2Q9BRK4 669 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 LLPHQ9BRT6 129 aaKnown RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 SLKQ9H2G2 1235 aaPredicted RBP13.13□□□□□ -0.31
TRAF4-206ENST00000454852 MAD2L2Q9UI95 211 aa13.13□□□□□ -0.31
TRAF4-206ENST00000454852 GOLGA8AA7E2F4 631 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 IRF6O14896 467 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 WDR46O15213 610 aaKnown RBP13.12□□□□□ -0.31
TRAF4-206ENST00000454852 PARP1P09874 1014 aaKnown RBP13.12□□□□□ -0.31
TRAF4-206ENST00000454852 ATP2B2Q01814 1243 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 MTMR2Q13614 643 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 NTRK3Q16288 839 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 RTN1Q16799 776 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 BTNL9Q6UXG8 535 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 MICU3Q86XE3 530 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 PROCA1Q8NCQ7 364 aaPredicted RBP13.12□□□□□ -0.31
TRAF4-206ENST00000454852 CTCFLQ8NI51 663 aaPredicted RBP13.12□□□□□ -0.31
TRAF4-206ENST00000454852 EMILIN3Q9NT22 766 aa13.12□□□□□ -0.31
TRAF4-206ENST00000454852 IFNAR1P17181 557 aa13.11□□□□□ -0.31
TRAF4-206ENST00000454852 CDC27P30260 824 aa13.11□□□□□ -0.31
TRAF4-206ENST00000454852 GJA5P36382 358 aa13.11□□□□□ -0.31
TRAF4-206ENST00000454852 SLC1A4P43007 532 aa13.11□□□□□ -0.31
TRAF4-206ENST00000454852 APLP1P51693 650 aa13.11□□□□□ -0.31
TRAF4-206ENST00000454852 FUT2Q10981 343 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms