RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 SENP2Q9HC62 589 aa14.43□□□□□ -0.1
LINC00339-204ENST00000434233 ECE1P42892 770 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 USP14P54578 494 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 BACE1P56817 501 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 SH3D19Q5HYK7 790 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 CATIPQ7Z7H3 387 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 PNMA1Q8ND90 353 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 MAP3K14Q99558 947 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 VCPKMTQ9H867 229 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 CREBZFQ9NS37 354 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 KCNH4Q9UQ05 1017 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 SLC12A7Q9Y666 1083 aa14.42□□□□□ -0.1
LINC00339-204ENST00000434233 F5H6K3 240 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 CALM1P0DP23 149 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 CALM2P0DP24 149 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 CALM3P0DP25 149 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 RCAN1P53805 252 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 KLRC3Q07444 240 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 APOBRQ0VD83 1088 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 TROAPQ12815 778 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 USP17L2Q6R6M4 530 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 ZNF654Q8IZM8 581 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 GMCL1P1Q8NEA9 526 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 SNX21Q969T3 373 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 OTUD5Q96G74 571 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 WNK4Q96J92 1243 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 ZSCAN31Q96LW9 406 aaPredicted RBP14.41□□□□□ -0.1
LINC00339-204ENST00000434233 GOPCQ9HD26 462 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.41□□□□□ -0.1
LINC00339-204ENST00000434233 BRPF3Q9ULD4 1205 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 ABT1Q9ULW3 272 aaKnown RBP14.41□□□□□ -0.1
LINC00339-204ENST00000434233 LIMCH1Q9UPQ0 1083 aa14.41□□□□□ -0.1
LINC00339-204ENST00000434233 KLF18A0A0U1RQI7 1052 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 IRF6O14896 467 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 DDAH1O94760 285 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 ZBTB48P10074 688 aaPredicted RBP14.4□□□□□ -0.1
LINC00339-204ENST00000434233 GJA5P36382 358 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 ZNF157P51786 506 aaPredicted RBP14.4□□□□□ -0.1
LINC00339-204ENST00000434233 PPP2R5BQ15173 497 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 SPRYD7Q5W111 196 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 SLFN13Q68D06 897 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 APOA5Q6Q788 366 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 LRRC47Q8N1G4 583 aaKnown RBP14.4□□□□□ -0.1
LINC00339-204ENST00000434233 LPAR1Q92633 364 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 CCDC102AQ96A19 550 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 C12orf42Q96LP6 360 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 FEZ1Q99689 392 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 TPCN1Q9ULQ1 816 aa14.4□□□□□ -0.1
LINC00339-204ENST00000434233 TRIM75PA6NK02 468 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 ZBTB43O43298 467 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 SNHG28P0DPA3 235 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 PDIA3P30101 505 aaKnown RBP14.39□□□□□ -0.11
LINC00339-204ENST00000434233 MTMR2Q13614 643 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 DEFB115Q30KQ5 88 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 DCAF4Q8WV16 495 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 LARP6Q9BRS8 491 aaKnown RBP14.39□□□□□ -0.11
LINC00339-204ENST00000434233 TSHZ2Q9NRE2 1034 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 EMILIN3Q9NT22 766 aa14.39□□□□□ -0.11
LINC00339-204ENST00000434233 A0A0G2JLL6 359 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-204ENST00000434233 RASSF10A6NK89 507 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 CD2BP2O95400 341 aaKnown RBP14.38□□□□□ -0.11
LINC00339-204ENST00000434233 NDUFB10O96000 172 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 SLC10A3P09131 477 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 PDHBP11177 359 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 GTF2A2P52657 109 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 SNAPC2Q13487 334 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 GRM4Q14833 912 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 ME3Q16798 604 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 FASTKD5Q7L8L6 764 aaKnown RBP14.38□□□□□ -0.11
LINC00339-204ENST00000434233 PRRT2Q7Z6L0 340 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-204ENST00000434233 RASAL3Q86YV0 1011 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 FANCBQ8NB91 859 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 PROCA1Q8NCQ7 364 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-204ENST00000434233 NUP133Q8WUM0 1156 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 CHMP4CQ96CF2 233 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 GMCL1Q96IK5 515 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 SH2B1Q9NRF2 756 aaPredicted RBP14.38□□□□□ -0.11
LINC00339-204ENST00000434233 TMOD4Q9NZQ9 345 aa14.38□□□□□ -0.11
LINC00339-204ENST00000434233 PALM3A6NDB9 673 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 PFKFB2O60825 505 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 PARP1P09874 1014 aaKnown RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 BMP3P12645 472 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 SLC1A4P43007 532 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 GNAQP50148 359 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 HMGCS2P54868 508 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 ZYXQ15942 572 aaKnown RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 ASPRV1Q53RT3 343 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 KIAA1755Q5JYT7 1200 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 GPATCH4Q5T3I0 446 aaKnown RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 CTCFLQ8NI51 663 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 MS4A4AQ96JQ5 239 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 MYL10Q9BUA6 226 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 SLKQ9H2G2 1235 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 RBM28Q9NW13 759 aaKnown RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 NAP1L2Q9ULW6 460 aaPredicted RBP14.37□□□□□ -0.11
LINC00339-204ENST00000434233 HPS5Q9UPZ3 1129 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 PTPRFP10586 1907 aa14.37□□□□□ -0.11
LINC00339-204ENST00000434233 NID2Q14112 1375 aa14.36□□□□□ -0.11
LINC00339-204ENST00000434233 CCDC196A0A1B0GTZ2 297 aa14.36□□□□□ -0.11
LINC00339-204ENST00000434233 TESPA1A2RU30 521 aaPredicted RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms