RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 WDR18Q9BV38 432 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 IL17RBQ9NRM6 502 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 KIF3AQ9Y496 699 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 TACC3Q9Y6A5 838 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 SSC5DA1L4H1 1573 aa11.78□□□□□ -0.52
CD44-207ENST00000425428 GREB1LQ9C091 1923 aaPredicted RBP11.78□□□□□ -0.52
CD44-207ENST00000425428 IGKV6D-41A0A0C4DH26 115 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 GOLGA8AA7E2F4 631 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 K7ELQ4 463 aaPredicted RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 SLURP2P0DP57 97 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 SLC1A4P43007 532 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 ZNF157P51786 506 aaPredicted RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 SPP2Q13103 211 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 PABPC4Q13310 644 aaKnown RBP eCLIP11.77□□□□□ -0.52
CD44-207ENST00000425428 RTN1Q16799 776 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 CCDC96Q2M329 555 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 GPATCH4Q5T3I0 446 aaKnown RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 DLK2Q6UY11 383 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 PAXIP1Q6ZW49 1069 aaPredicted RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 DCAF4Q8WV16 495 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 OPTNQ96CV9 577 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 OTUD5Q96G74 571 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 MAP3K14Q99558 947 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 LZTS2Q9BRK4 669 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 AGXT2Q9BYV1 514 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 TSHZ2Q9NRE2 1034 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 TMX2Q9Y320 296 aa11.77□□□□□ -0.52
CD44-207ENST00000425428 RBM19Q9Y4C8 960 aaKnown RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 CTDP1Q9Y5B0 961 aaPredicted RBP11.77□□□□□ -0.52
CD44-207ENST00000425428 TRIM75PA6NK02 468 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 BACE1P56817 501 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 STK3Q13188 491 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 PPIL2Q13356 520 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 TOB2Q14106 344 aaPredicted RBP11.77□□□□□ -0.53
CD44-207ENST00000425428 ASPRV1Q53RT3 343 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 LDLRAD1Q5T700 205 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 SLFN13Q68D06 897 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 RCSD1Q6JBY9 416 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 APOA5Q6Q788 366 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 FASTKD5Q7L8L6 764 aaKnown RBP11.77□□□□□ -0.53
CD44-207ENST00000425428 LRRC47Q8N1G4 583 aaKnown RBP11.77□□□□□ -0.53
CD44-207ENST00000425428 GMCL1P1Q8NEA9 526 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 CCDC102AQ96A19 550 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 KIAA1683Q9H0B3 1180 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 FZD1Q9UP38 647 aa11.77□□□□□ -0.53
CD44-207ENST00000425428 OTOFQ9HC10 1997 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 PASKQ96RG2 1323 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 SPDYE5A6NIY4 337 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 CXCL11O14625 94 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 SNAPC2Q13487 334 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 ZYXQ15942 572 aaKnown RBP11.76□□□□□ -0.53
CD44-207ENST00000425428 TRIM22Q8IYM9 498 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 CHURC1Q8WUH1 139 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 RBM27Q9P2N5 1060 aaKnown RBP11.76□□□□□ -0.53
CD44-207ENST00000425428 SNCAIPQ9Y6H5 919 aa11.76□□□□□ -0.53
CD44-207ENST00000425428 F5H6K3 240 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 ZBTB48P10074 688 aaPredicted RBP11.75□□□□□ -0.53
CD44-207ENST00000425428 GUCY1A2P33402 732 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 GTF2A2P52657 109 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 KLRC3Q07444 240 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 MTMR2Q13614 643 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 RRP1BQ14684 758 aaKnown RBP11.75□□□□□ -0.53
CD44-207ENST00000425428 CST9Q5W186 159 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 RGMBQ6NW40 437 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 MOB2Q70IA6 237 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 FANCBQ8NB91 859 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.75□□□□□ -0.53
CD44-207ENST00000425428 VCPKMTQ9H867 229 aa11.75□□□□□ -0.53
CD44-207ENST00000425428 WDR46O15213 610 aaKnown RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 CETPP11597 493 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 BMP3P12645 472 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 PDIA3P30101 505 aaKnown RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 ECE1P42892 770 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 NOVP48745 357 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 APLP1P51693 650 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 EVCP57679 992 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 CCT2P78371 535 aaKnown RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 FMR1Q06787 632 aaKnown RBP eCLIP11.74□□□□□ -0.53
CD44-207ENST00000425428 TRAF1Q13077 416 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 OTUD7BQ6GQQ9 843 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 GADL1Q6ZQY3 521 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 CLEC10AQ8IUN9 316 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 CCDC144CPQ8IYA2 1237 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 GMCL1Q96IK5 515 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 HHIPL1Q96JK4 782 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 LARP6Q9BRS8 491 aaKnown RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 SEC63Q9UGP8 760 aaKnown RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 TPCN1Q9ULQ1 816 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 AFG3L2Q9Y4W6 797 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 TLL2Q9Y6L7 1015 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 PFKFB2O60825 505 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 STAT2P52630 851 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 SAPCD2Q86UD0 394 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 FAM160B2Q86V87 743 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 FAM184AQ8NB25 1140 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 PROCA1Q8NCQ7 364 aaPredicted RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 ACER1Q8TDN7 264 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 WASF1Q92558 559 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms