RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ESR2Q92731 530 aa12.21□□□□□ -0.45
CUX1-205ENST00000425244 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.21□□□□□ -0.45
CUX1-205ENST00000425244 PCDHB6Q9Y5E3 794 aa12.21□□□□□ -0.45
CUX1-205ENST00000425244 CHD4Q14839 1912 aa12.21□□□□□ -0.45
CUX1-205ENST00000425244 POLR2DO15514 142 aaKnown RBP12.21□□□□□ -0.46
CUX1-205ENST00000425244 UBASH3AP57075 661 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 C15orf52Q6ZUT6 534 aaKnown RBP12.21□□□□□ -0.46
CUX1-205ENST00000425244 FOXP4Q8IVH2 680 aaPredicted RBP12.21□□□□□ -0.46
CUX1-205ENST00000425244 GRAMD1CQ8IYS0 662 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 RGS22Q8NE09 1264 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 DPF2Q92785 391 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 EYA3Q99504 573 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 COA1Q9GZY4 146 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 CABP5Q9NP86 173 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 C10orf71Q711Q0 1435 aa12.21□□□□□ -0.46
CUX1-205ENST00000425244 DUOX1Q9NRD9 1551 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 IKBKBO14920 756 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 SCNN1DP51172 638 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 TMTC2Q8N394 836 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 RIOK1Q9BRS2 568 aaKnown RBP12.2□□□□□ -0.46
CUX1-205ENST00000425244 FANCLQ9NW38 375 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 VPS54Q9P1Q0 977 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.2□□□□□ -0.467e-6■□□□□ 9.2
CUX1-205ENST00000425244 V9GYY5 206 aaPredicted RBP12.2□□□□□ -0.46
CUX1-205ENST00000425244 LRRC37AA6NMS7 1700 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 PPIP5K2O43314 1243 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 NRDCO43847 1150 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 CBX1P83916 185 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 RILPL1Q5EBL4 403 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 NYAP1Q6ZVC0 841 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 HSD3B7Q9H2F3 369 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 PRDM10Q9NQV6 1147 aa12.2□□□□□ -0.46
CUX1-205ENST00000425244 ZNF277Q9NRM2 450 aaPredicted RBP12.2□□□□□ -0.46
CUX1-205ENST00000425244 FAM205CA6NFA0 338 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 SPDYE4A6NLX3 237 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 EVX2Q03828 476 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 PDE4BQ07343 736 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 GOLGA8FQ08AF8 430 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 GOLGA8DPQ0D2H9 430 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 C7orf43Q8WVR3 580 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 ANKRD7Q92527 254 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 FOXP1Q9H334 677 aaPredicted RBP12.19□□□□□ -0.46
CUX1-205ENST00000425244 SERTAD1Q9UHV2 236 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 HOOK1Q9UJC3 728 aaKnown RBP12.19□□□□□ -0.46
CUX1-205ENST00000425244 FBXO2Q9UK22 296 aaPredicted RBP12.19□□□□□ -0.46
CUX1-205ENST00000425244 ECE2O60344 883 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 PRR29P0C7W0 189 aa12.19□□□□□ -0.46
CUX1-205ENST00000425244 E4F1Q66K89 784 aaPredicted RBP12.19□□□□□ -0.46
CUX1-205ENST00000425244 FAM237AA0A1B0GTK4 181 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 BMP6P22004 513 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 POSTNQ15063 836 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 PDS5AQ29RF7 1337 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 IFIT1BQ5T764 474 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 UTP14CQ5TAP6 766 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 USP49Q70CQ1 688 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 KIAA0825Q8IV33 1275 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 CERS5Q8N5B7 392 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 ENAHQ8N8S7 591 aaPredicted RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 KIF18AQ8NI77 898 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 SH3RF3Q8TEJ3 882 aaPredicted RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 ZSCAN10Q96SZ4 725 aaPredicted RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 NOL10Q9BSC4 688 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 PIM2Q9P1W9 311 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 TTF2Q9UNY4 1162 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 BCS1LQ9Y276 419 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 BAZ2AQ9UIF9 1905 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 CCDC88AQ3V6T2 1871 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 LTBP1Q14766 1721 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 TMEM232C9JQI7 657 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 PTPREP23469 700 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 USP5P45974 858 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 CATIPQ7Z7H3 387 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 TRMT44Q8IYL2 757 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 PPP1R13BQ96KQ4 1090 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 ZNF215Q9UL58 517 aaPredicted RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 V9GY48 417 aaPredicted RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 USP17L12C9JPN9 530 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 USP17L21D6R901 530 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 CBFA2T2O43439 604 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 PLEKHA8P1O95397 391 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 SEC23AQ15436 765 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 CCDC93Q567U6 631 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 CRNKL1Q9BZJ0 848 aaKnown RBP12.18□□□□□ -0.46
CUX1-205ENST00000425244 CSRNP2Q9H175 543 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 MAN1B1Q9UKM7 699 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 ECM29Q5VYK3 1845 aa12.18□□□□□ -0.46
CUX1-205ENST00000425244 TOP1P11387 765 aaKnown RBP12.17□□□□□ -0.46
CUX1-205ENST00000425244 XBP1P17861 261 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 CDK11BP21127 795 aaKnown RBP12.17□□□□□ -0.46
CUX1-205ENST00000425244 BTDP43251 543 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 RBM5P52756 815 aaKnown RBP eCLIP12.17□□□□□ -0.464e-7■■■□□ 19.1
CUX1-205ENST00000425244 HOMER1Q86YM7 354 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 TGFBRAP1Q8WUH2 860 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 SMARCE1Q969G3 411 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 TMEM51Q9NW97 253 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 SAP30BPQ9UHR5 308 aaKnown RBP12.17□□□□□ -0.46
CUX1-205ENST00000425244 MYH2Q9UKX2 1941 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 IQCA1Q86XH1 822 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 LARGE2Q8N3Y3 721 aa12.17□□□□□ -0.46
CUX1-205ENST00000425244 TBC1D22AQ8WUA7 517 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms