RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 HMGCS2P54868 508 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 EXOSC10Q01780 885 aaKnown RBP19.98■□□□□ 0.79
COL7A1-202ENST00000422991 MOGSQ13724 837 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 SART3Q15020 963 aaKnown RBP19.98■□□□□ 0.79
COL7A1-202ENST00000422991 BLOC1S2Q6QNY1 142 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 DHX32Q7L7V1 743 aaKnown RBP19.98■□□□□ 0.79
COL7A1-202ENST00000422991 DGKHQ86XP1 1220 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 LRRC47Q8N1G4 583 aaKnown RBP19.98■□□□□ 0.79
COL7A1-202ENST00000422991 ANKS1AQ92625 1134 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 TBC1D32Q96NH3 1257 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 ZIC5Q96T25 663 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 ZSWIM6Q9HCJ5 1215 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 PRDM10Q9NQV6 1147 aa19.98■□□□□ 0.79
COL7A1-202ENST00000422991 MANSC4A6NHS7 340 aaPredicted RBP19.97■□□□□ 0.79
COL7A1-202ENST00000422991 IFIT3O14879 490 aaKnown RBP19.97■□□□□ 0.79
COL7A1-202ENST00000422991 CA12O43570 354 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 TOP1P11387 765 aaKnown RBP19.97■□□□□ 0.79
COL7A1-202ENST00000422991 CETPP11597 493 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 CPA1P15085 419 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 RPS6KB1P23443 525 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 USP14P54578 494 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 DGKZQ13574 1117 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 ZYXQ15942 572 aaKnown RBP19.97■□□□□ 0.79
COL7A1-202ENST00000422991 USP17L2Q6R6M4 530 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 IGDCC4Q8TDY8 1250 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 BRI3BPQ8WY22 251 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 TMEM87BQ96K49 555 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 C12orf42Q96LP6 360 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 TMEM47Q9BQJ4 181 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 VCPKMTQ9H867 229 aa19.97■□□□□ 0.79
COL7A1-202ENST00000422991 CCL15-CCL14A0A0B4J2E2 113 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 TESPA1A2RU30 521 aaPredicted RBP19.96■□□□□ 0.79
COL7A1-202ENST00000422991 SH2B2O14492 632 aaPredicted RBP19.96■□□□□ 0.79
COL7A1-202ENST00000422991 KIF23Q02241 960 aaPredicted RBP19.96■□□□□ 0.79
COL7A1-202ENST00000422991 CCL15Q16663 113 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 TMEM67Q5HYA8 995 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 PROCA1Q8NCQ7 364 aaPredicted RBP19.96■□□□□ 0.79
COL7A1-202ENST00000422991 TCEANC2Q96MN5 208 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 LY9Q9HBG7 655 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 GOPCQ9HD26 462 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 GPHNQ9NQX3 736 aaPredicted RBP19.96■□□□□ 0.79
COL7A1-202ENST00000422991 EMILIN3Q9NT22 766 aa19.96■□□□□ 0.79
COL7A1-202ENST00000422991 PARP14Q460N5 1801 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 ERICH2A1L162 156 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 HSPA8P11142 646 aaKnown RBP19.95■□□□□ 0.78
COL7A1-202ENST00000422991 LBX1P52954 281 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 WTAPQ15007 396 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 KIAA1755Q5JYT7 1200 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 IFIT1BQ5T764 474 aaKnown RBP19.95■□□□□ 0.78
COL7A1-202ENST00000422991 IFFO2Q5TF58 517 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 RUFY3Q7L099 469 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 GMCL1P1Q8NEA9 526 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 KIF2CQ99661 725 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 LRRC2Q9BYS8 371 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 UPF3BQ9BZI7 483 aaKnown RBP19.95■□□□□ 0.78
COL7A1-202ENST00000422991 SENP2Q9HC62 589 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 TMOD4Q9NZQ9 345 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 CYP46A1Q9Y6A2 500 aa19.95■□□□□ 0.78
COL7A1-202ENST00000422991 SREBF2Q12772 1141 aa19.94■□□□□ 0.78
COL7A1-202ENST00000422991 GADL1Q6ZQY3 521 aa19.94■□□□□ 0.78
COL7A1-202ENST00000422991 FASTKD5Q7L8L6 764 aaKnown RBP19.94■□□□□ 0.78
COL7A1-202ENST00000422991 LPAR1Q92633 364 aa19.94■□□□□ 0.78
COL7A1-202ENST00000422991 KAT14Q9H8E8 782 aa19.94■□□□□ 0.78
COL7A1-202ENST00000422991 F5H6K3 240 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 NDUFB10O96000 172 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 VCAM1P19320 739 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 INHBEP58166 350 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 KLRC3Q07444 240 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 TREML2Q5T2D2 321 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 GPAT2Q6NUI2 795 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 REM2Q8IYK8 340 aaPredicted RBP19.93■□□□□ 0.78
COL7A1-202ENST00000422991 PNMA1Q8ND90 353 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 PTPN18Q99952 460 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 AGTPBP1Q9UPW5 1226 aa19.93■□□□□ 0.78
COL7A1-202ENST00000422991 LIFRP42702 1097 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 TM4SF4P48230 202 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 ANKRD23Q86SG2 305 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 TNS4Q8IZW8 715 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 SPICE1Q8N0Z3 855 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 FBXL16Q8N461 479 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 AGXT2Q9BYV1 514 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 RLFQ13129 1914 aa19.92■□□□□ 0.78
COL7A1-202ENST00000422991 BTBD19C9JJ37 291 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 IGF2BP3O00425 579 aaKnown RBP eCLIP19.91■□□□□ 0.78
COL7A1-202ENST00000422991 WDR46O15213 610 aaKnown RBP19.91■□□□□ 0.78
COL7A1-202ENST00000422991 RAD21O60216 631 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 SLFN13Q68D06 897 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 Q6ZUG5 572 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 RASGRP2Q7LDG7 609 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 SGMS1Q86VZ5 419 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 FAM43AQ8N2R8 423 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 GMCL1Q96IK5 515 aa19.91■□□□□ 0.78
COL7A1-202ENST00000422991 SNHG28P0DPA3 235 aa19.9■□□□□ 0.78
COL7A1-202ENST00000422991 IFNL1Q8IU54 200 aa19.9■□□□□ 0.78
COL7A1-202ENST00000422991 TMTC2Q8N394 836 aa19.9■□□□□ 0.78
COL7A1-202ENST00000422991 NUP88Q99567 741 aaPredicted RBP19.9■□□□□ 0.78
COL7A1-202ENST00000422991 RPAP3Q9H6T3 665 aaPredicted RBP19.9■□□□□ 0.78
COL7A1-202ENST00000422991 ZCCHC17Q9NP64 241 aaKnown RBP19.9■□□□□ 0.78
COL7A1-202ENST00000422991 PDRG1Q9NUG6 133 aa19.9■□□□□ 0.78
COL7A1-202ENST00000422991 SLC45A1Q9Y2W3 748 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms